Data from: Concordance of bacterial communities of two tick species and blood of their shared rodent host

Rynkiewicz EC, Hemmerich C, Fuqua C, Clay K, Rusch DB

Date Published: April 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.gb538

 

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Title consensus_pynast_aligned_with_X.rooted
Downloaded 7 times
Description Rooted tree for UniFrac analysis
Download consensus_pynast_aligned_with_X.rooted.tree (3.233 Kb)
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Title rareify_500_mean_complete_submit
Downloaded 6 times
Description Rarefied bacterial communities from two tick species and rodent host blood with metadata. Communities were rarefied to 500 sequences. The data is the average of 1000 rarefactions to 500 sequences.
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Title rareify_50_mean_no3_complete_submit
Downloaded 9 times
Description Rarefied bacterial communities from two tick species and rodent host blood, with the top 3 most abundant OTUs removed. Sequences from these OTUs was removed and samples were rarefied to 50 sequences. The data is the average of 1000 rarefactions.
Download rareify_50_mean_no3_complete_submit.csv (29.54 Kb)
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Title Barcodes
Downloaded 6 times
Description Barcodes needed to de-multiplex sequence data
Download all.oligos (6.061 Kb)
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Title GenBank Accession numbers for OTUs
Downloaded 11 times
Description Accession numbers for the GenBank submissions associated with the OTUs used in the final analysis. The following OTUs are not included in the SRA submission only, due to the quality of their representative sequence not meeting the standards for GenBank: 21, 28, 45, 56, 60, 67, 74, 88, 93, 99, 103, 108, 110, 111.
Download seqids.txt (5.512 Kb)
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When using this data, please cite the original publication:

Rynkiewicz EC, Hemmerich C, Fuqua C, Clay K, Rusch DB (2015) Concordance of bacterial communities of two tick species and blood of their shared rodent host. Molecular Ecology 24(10): 2566-2579. http://dx.doi.org/10.1111/mec.13187

Additionally, please cite the Dryad data package:

Rynkiewicz EC, Hemmerich C, Fuqua C, Clay K, Rusch DB (2015) Data from: Concordance of bacterial communities of two tick species and blood of their shared rodent host. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gb538
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