Data from: Ecomorphological adaptation in three mudskippers (Teleostei: Gobioidei: Gobiidae) from the Persian Gulf and the Gulf of Oman

Polgar G, Ghanbarifardi M, Milli S, Agorreta A, Aliabadian M, Esmaeili HR, Khang TF

Date Published: April 14, 2017

DOI: http://dx.doi.org/10.5061/dryad.gc3k5

 

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Title Mudskipper image data
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Description Original images of the specimens used (n=9 for Boleophthalmus dussumieri; n=10 for Periophthalmus waltoni; n=12 for Scartelaos tenuis).
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Title Mudskipper TPS data
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Description Landmark coordinate data of mudskipper digital images obtained using tpsDig v. 2.16.
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Title Mudskipper maximum likelihood and Bayesian phylogenetic trees
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Description RAxML_bipartitions.persian_mudskippers.TRE contains the maximum likelihood phylogenetic tree of 19 fish species. BIpersian_mudskippers.TRE contains the Bayesian phylogenetic tree for the same 19 fish species. mudskipper_three_species_ML_tree.NWK contains the maximum likelihood phylogenetic tree for Boleophthalmus dussumieri, Periophthalmus waltoni, and Scartelaos tenuis inferred from the tree given in RAxML_bipartitions.persian_mudskippers.TRE. All tree data are specified in Newick tree format.
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Title Mudskipper ecological data
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Description The ecological data given in Table 1 of the manuscript. Column 1 gives the abbreviated location name of the study plots; Column 2 gives their geographic coordinates. Abbreviations for the ecological variables: B, P, S = number of burrows per square metre of each species; B = B. dussumieri; P = P. waltoni; S = S. tenuis; F = fluvial action; Sc = weight percent fraction of sand; Sd = sediment type; T = tidal action; V = density of the root network; W = wave action.
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Title Mudskipper morphometric data
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Description The file contains data of morphometric variables for all 31 mudskipper specimens. Column 1: specimen label identification; Column 2: species name. Abbreviations: BD = body depth; LPD = least depth of caudal peduncle; HD = head depth; PAL = post-anal tail length; PDL = predorsal length; INT = internal length; SL = standard length; Sa = surface area of region a; Sb = surface area of region b; Sc = surface area of region c; St = total surface area; Va = volume of region a; Vb = volume of region b; Vc = volume of region c; Vt = total volumel; SAVa = surface area to volume ratio of region a; SAVb = surface area to volume ratio of region b; SAVc = surface area to volume ratio of region c; SAVt = total surface area to volume ratio
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Title Mudskipper Procrustes shape variable matrix
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Description The matrix of Procrustes shape variables after application of Generalized Procrustes Analysis as implemented via the gpagen function of the geomorph R package (version 3.0.0). The dimension of the matrix is 31x28 (31 specimens, 14 landmarks).
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Title Mudskipper outline TPS data file
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Description The TPS data file containing the coordinates of the 14 landmarks from the mean shape configuration followed by semi-landmarks defining the outlines of the body, the mouth, and the eye.
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Title Mudskipper concatenated multiple sequence alignment
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Description Concatenated multiple sequence alignment of cox1-cytb-rag1 DNA sequences from 19 species of fish in Nexus file format.
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Title Mudskipper project R codes I
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Description Major R codes for reproducing analyses in the manuscript.
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Title Mudskipper project R codes II
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Description Minor R code for generating the outline of the mudskipper.
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Title Raw sediment analysis results
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Description The analyses in this file form the bases for subsequent construction of the sediment-related ecological variables Sd = sediment type, and Sc = weight percent fraction of sand, which are ordinal.
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Title Categorisation of sediment-related ecological variables
Downloaded 9 times
Description This file explains how the ordinal scales of the sediment-related ecological variables were ascertained for each sampling site, based on the results of the raw sediment analysis.
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When using this data, please cite the original publication:

Polgar G, Ghanbarifardi M, Milli S, Agorreta A, Aliabadian M, Esmaeili HR, Khang TF (2017) Ecomorphological adaptation in three mudskippers (Teleostei: Gobioidei: Gobiidae) from the Persian Gulf and the Gulf of Oman. Hydrobiologia 795(1): 91-111. http://dx.doi.org/10.1007/s10750-017-3120-8

Additionally, please cite the Dryad data package:

Polgar G, Ghanbarifardi M, Milli S, Agorreta A, Aliabadian M, Esmaeili HR, Khang TF (2017) Data from: Ecomorphological adaptation in three mudskippers (Teleostei: Gobioidei: Gobiidae) from the Persian Gulf and the Gulf of Oman. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gc3k5
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