Data from: Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis

Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J

Date Published: February 22, 2017

DOI: http://dx.doi.org/10.5061/dryad.gd14g

 

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Title Genome alignment for 3,156 isolates of S. pneumoniae
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Description Fasta formatted genome alignment of the Maela Streptococcus pneumoniae isolates considered in the study.
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Title Genome alignment for 3,442 isolates of S. pyogenes
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Description Fasta formatted genome alignment of 3,442 isolates of Streptococcus pyogenes considered in the study.
Download M1_3442-postepidemic_strains_alignment.7z (226.5 Mb)
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Title TableS5
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Description Coupling estimates for the 5078 locus M1 data set
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When using this data, please cite the original publication:

Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J (2017) Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. PLOS Genetics 13(2): e1006508. http://dx.doi.org/10.1371/journal.pgen.1006508

Additionally, please cite the Dryad data package:

Skwark MJ, Croucher NJ, Puranen S, Chewapreecha C, Pesonen M, Xu YY, Turner P, Harris SR, Beres SB, Musser JM, Parkhill J, Bentley SD, Aurell E, Corander J (2017) Data from: Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gd14g
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