Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes

Irisarri I, Meyer A

Date Published: June 9, 2016

DOI: http://dx.doi.org/10.5061/dryad.gd74v

 

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Title 2960_smx_3lf
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Title 251_amemiya_3lf
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Title 1821_smx_3lf
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Title 1821_homog_blocks
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Title 251_heterog_blocks
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Title 251_homog_blocks
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Title 1821_heterog_blocks
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Title get_support_values_from_tree
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Description Perl script to extract support values from a tree for a predefined clade
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Title clade_support_from_site_patterns
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Description Perl script to identify sites supporting a predefined clade, classified by the method of Waegele and Rodding (1998)
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Title parse_trees_test_alt_topologies
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Description Perl script to test tree topologies. Specifically, it checks if the tree conforms to T1, T2 or T3 hypotheses.
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Title parse_tree_check_outparalogs
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Description Perl script to identify putative instances of paralogy by testing the monophyly of a specified clade on gene trees.
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Title Supplementary Information, Tables and Figures
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When using this data, please cite the original publication:

Irisarri I, Meyer A (2016) The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes. Systematic Biology 65(6): 1057-1075. http://dx.doi.org/10.1093/sysbio/syw057

Additionally, please cite the Dryad data package:

Irisarri I, Meyer A (2016) Data from: The identification of the closest living relative(s) of tetrapods: phylogenomic lessons for resolving short ancient internodes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gd74v
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