Data from: Chromosome-wide impacts on the expression of incompatibilities in hybrids of Tigriopus californicus

Willett CS, Lima TG, Hatfield L, Kovaleva I

Date Published: April 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.gh2pb

 

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Title Genotyping data from DA1 adults
Downloaded 5 times
Description This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date of 96 well collection plate; ID-identity of subset of F2 adults; plate-additional plate from same ID line denoted with b (or c); sex-male or female adult; TEMP-temperature environment in which F2 individual developed; GDHad_1-marker name (subsequent columns are the additional 24 markers).
Download DAadult_score2_10fadded.csv (55.54 Kb)
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Title Genotyping data from AD1 adults
Downloaded 4 times
Description This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date identifier for copepod; plate-plate identifier for 96 well plate; ID-identity of subset of F2 adults; sex-male or female adult; TEMP-temperature environment in which F2 individual developed; GDHad_1-marker name (subsequent columns are the additional 24 markers).
Download AD_join_score3_3_15.csv (50.9 Kb)
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Title Genotyping data from DA1 F2 nauplii
Downloaded 6 times
Description This spreadsheet has the genotyping results from 25 loci for crosses between SD females and AB males. Genotypes are as follows: (S-SD homozygote, SB-heterozygote, B-AB homozygote). Headers for columns are in order: sample-unique sample number for each copepod; date-date identifier for copepod collection; ID-identity female from which eggsac was obtained; sex-N for nauplii TEMP-temperature environment in which F2 individual developed (all 20 degrees for this set); GDHad_1-marker name (subsequent columns are the additional 24 markers).
Download DAnaup_score2.csv (9.911 Kb)
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Title R code for analyzing 2-way and 3-way interactions
Downloaded 5 times
Description This code was used to compute chi-square values for all 2-way and 3-way interactions between the loci included in the analysis.
Download DAadult_source_code_update.R (26.88 Kb)
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Title Male/female contingency table R code
Downloaded 5 times
Description This R code calculates the contingency tables for genotypic results for males versus females.
Download mf_contingency_calcsR.R (14.58 Kb)
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When using this data, please cite the original publication:

Willett CS, Lima TG, Kovaleva I, Hatfield L (2016) Chromosome-wide impacts on the expression of incompatibilities in hybrids of Tigriopus californicus. G3: Genes - Genomes - Genetics 6(6): 1739-1749. http://dx.doi.org/10.1534/g3.116.028050

Additionally, please cite the Dryad data package:

Willett CS, Lima TG, Hatfield L, Kovaleva I (2016) Data from: Chromosome-wide impacts on the expression of incompatibilities in hybrids of Tigriopus californicus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gh2pb
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