Data from: A passerine bird's evolution corroborates the geologic history of the island of New Guinea

Deiner K, Lemmon AR, Mack AL, Fleischer RC, Dumbacher JP

Date Published: May 5, 2011

DOI: http://dx.doi.org/10.5061/dryad.gn1v3

 

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Title C_megar_mtDNAlignment
Downloaded 82 times
Description This is a sequence alignment of concatenated mtDNA genes used for estimating the maximum likelihood tree.
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Title C_megar_nDNAphasedalignment
Downloaded 72 times
Description This is a sequence alignment of phase data from the AR35 nuclear gene.
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Title C_megar_mtDNA_Arlequin
Downloaded 72 times
Description Input file used for analysis in Arlequin with population structure section.
Download C_megar_mtDNA_Arlequin.arp (405.5 Kb)
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Title C_megar_nDNA_Arlequin
Downloaded 72 times
Description Input file used for analysis in Arlequin.
Download C_megar_nDNA_Arlequin.arp (39.76 Kb)
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Title C_megar_mtDNA_network
Downloaded 77 times
Description Input file used for estimating haplotype network.
Download C_megar_mtDNA_network.nex (93.08 Kb)
Download README.txt (1.175 Kb)
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Title C_megar_nDNA_network
Downloaded 78 times
Description Input file used for estimating the nuclear allele network.
Download C_megar_nDNA_network.nex (42.74 Kb)
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Title C_megar_mtDNABestTreePhylomapper
Downloaded 72 times
Description Tree used for estimation of evolution in dispersal distance.
Download C_megar_mtDNABestTreePhylomapper.tre (22.55 Kb)
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Title C_megar_Locations_phylomapper
Downloaded 91 times
Description Latitude and longitude positions of each sample used for estimation of evolution in dispersal distances.
Download C_megar_Locations_phylomapper.nex (7.661 Kb)
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Title BB_SPB
Downloaded 66 times
Description Raw sequence data that was used to phase nuclear alleles. These are for the basins Bintuni and South Papua.
Download BB_SPB.fasta (4.881 Kb)
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Title CapeV
Downloaded 69 times
Description Raw sequence data that was used to phase nuclear alleles. These are for the basin Cape Vogel.
Download CapeV.fasta (1.774 Kb)
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Title EI
Downloaded 59 times
Description Raw sequence data that was used to phase nuclear alleles. These are for the eastern islands.
Download EI.fasta (1.767 Kb)
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Title MB
Downloaded 61 times
Description Raw sequence data that was used to phase nuclear alleles. These are for the basin Meervlakte.
Download MB.fasta (492 bytes)
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Title SPP
Downloaded 67 times
Description Raw sequence data for nuclear alleles that were phased. The are sequences from the basin South Papuan Peninsula.
Download SPP.fasta (10.78 Kb)
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Title SRB
Downloaded 61 times
Description Raw sequence data for nuclear alleles that were phased. The are sequences from the basin Sepik Ramu.
Download SRB.fasta (3.549 Kb)
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Title TF
Downloaded 60 times
Description Raw sequence data for nuclear alleles that were phased. The are sequences from the basin Trans-fly.
Download TF.fasta (587 bytes)
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Title READMEFILE
Downloaded 46 times
Description This readme file describes all the data files in this package. It is also available for download alongside each file.
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When using this data, please cite the original publication:

Deiner K, Lemmon AR, Mack AL, Fleischer RC, Dumbacher JP (2011) A passerine bird's evolution corroborates the geologic history of the island of New Guinea. PLoS ONE 6(5): e19479. http://dx.doi.org/10.1371/journal.pone.0019479

Additionally, please cite the Dryad data package:

Deiner K, Lemmon AR, Mack AL, Fleischer RC, Dumbacher JP (2011) Data from: A passerine bird's evolution corroborates the geologic history of the island of New Guinea. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gn1v3
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