Data from: Deciphering the genomic architecture of the stickleback brain with a novel multi-locus gene-mapping approach

Li Z, Guo B, Yang J, Herczeg G, Gonda A, Balázs G, Shikano T, Calboli FCF, Merilä J

Date Published: December 19, 2016

DOI: http://dx.doi.org/10.5061/dryad.gn44q

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Data for QTL mapping on brain size in sticklebacks
Downloaded 6 times
Description The data set is used in a quantitative trait locus mapping study on six brain volume traits including bulbus olfactorious, telecephalon, optic tectum, hypothalamus, cerebellum and total brain size of a F2 nine stickleback population. The data consists of 239 individuals, and 15198 non-identical SNPs. A linkage map has been constructed, and divide the SNPs into 21 linkage groups. The data are distributed as following: File1: brain_phenotype.txt -The phenotype data of six brain traits, which have been corrected by the sex and bodysize effects. File2: genotype.txt -The SNP data, each row represents the individuals which is one-to-one match to the phenotype data file, and each column represents the SNPs which is one-to-one match to the linkage map file. The missing genotype data have been imputed, and coded as 1,0,-1 for the genotypes AA, AB and BB, respectively. File3: linkage_map.csv -The linkage map information, column1 is the marker ID, column2 is the linkage group info, and column3 is the linkage position of each SNP
Download QTL_brain.zip (831.2 Kb)
Details View File Details

When using this data, please cite the original publication:

Li Z, Guo B, Yang J, Herczeg G, Gonda A, Balázs G, Shikano T, Calboli FCF, Merilä J (2017) Deciphering the genomic architecture of the stickleback brain with a novel multilocus gene-mapping approach. Molecular Ecology 26(6): 1557-1575. http://dx.doi.org/10.1111/mec.14005

Additionally, please cite the Dryad data package:

Li Z, Guo B, Yang J, Herczeg G, Gonda A, Balázs G, Shikano T, Calboli FCF, Merilä J (2017) Data from: Deciphering the genomic architecture of the stickleback brain with a novel multi-locus gene-mapping approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gn44q
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: