Data from: RAD-mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region

Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D

Date Published: July 1, 2015

DOI: http://dx.doi.org/10.5061/dryad.gp23s

 

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Title SNP file from Samtools
Downloaded 9 times
Description SNPs called from each RAD-tag and the paired read2 sequence(s)
Download all_snps_samtools_filter_d200-2000q60.vcf (5.114 Mb)
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Title Joinmap input files
Downloaded 56 times
Description Markers generated by RAD-Sequencing and validated by genotyping in this study
Download JoinMap.xlsx (221.5 Kb)
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Title Contig coverage info for all contigs and candidate hemizygous genes
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Description Coverage information from the parents and all the progeny and normalized by the total number of reads in each individuals. And the coverage information for the 22 candidate hemizygous genes
Download Coverage.xlsx (3.256 Mb)
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Title Primers for genotyping and population study
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Download Primers.docx (17.97 Kb)
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Title Statistics for Figure2&3
Downloaded 11 times
Download Statistics for Figure2&3.docx (16.31 Kb)
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Title Read_mapping_results.zip
Downloaded 38 times
Description Reads mapped to the assembled RAD contigs
Download Read_Mapping_results.zip (4.171 Gb)
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Title all_contigs_first_and_second_reads
Downloaded 10 times
Description Assembled RAD contigs including read1 and read2
Download all_contigs_first_and_second_reads.fa (6.423 Mb)
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Title Sequence alignments
Downloaded 17 times
Description Aligned Sanger sequences for all individuals and loci
Download Sequence_alignments.zip (14.82 Kb)
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When using this data, please cite the original publication:

Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D (2016) RAD-mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region. Molecular Ecology 25(1): 414–430. http://dx.doi.org/10.1111/mec.13297

Additionally, please cite the Dryad data package:

Qiu S, Bergero R, Guirao-Rico S, Campos JL, Cezard T, Gharbi K, Charlesworth D (2015) Data from: RAD-mapping reveals an evolving, polymorphic and fuzzy boundary of a plant pseudoautosomal region. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gp23s
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