Data from: Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae)

Grogan KA, Sharbel TF, McKay JK, Lovell JT

Date Published: August 7, 2014

DOI: http://dx.doi.org/10.5061/dryad.gp495

 

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Title spat2014_genotypematrix_inpegas
Downloaded 10 times
Description 15-locus SSR genotype matrix. Coded in the "pegas" R package format. Also included in the matrix is a single outgroup, "stricta4".
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Title spat2013_gbs_snps
Downloaded 9 times
Description GBS genotype matrix. Output from the institute for genomic diversity pipeline in tassel. Alignment to A. lyrata was conducted as follows: bwa aln -t 8 /local/genomes/public/arabidopsis/lyrata/Alyrata_107.fa.gz mergedtagcounts/arabidopsis_CSU_boechera.fastq.fq > arabidopsis_CSU_boechera.sai bwa samse /local/genomes/public/arabidopsis/lyrata/Alyrata_107.fa.gz arabidopsis_CSU_boechera.sai mergedtagcounts/arabidopsis_CSU_boechera.fastq.fq > 1sam
Download spat2013_gbs_snps.csv (943.1 Kb)
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Title spat2013_8phenos_repro
Downloaded 7 times
Description Phenotypes of all genotypes (and replicates) including mating system.
Download spat2013_8phenos_repro.csv (66.52 Kb)
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Title spat2013_selectionfield_long
Downloaded 5 times
Description Genotype means of FT, GRLA and Fitness for all plants grown in the two field sites
Download spat2013_selectionfield_long.csv (8.602 Kb)
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Title spat2013_allsamples.tre
Downloaded 3 times
Description The full sample tree file from the R package "ape"
Download spat2013_allsamples.tre.rtf (7.052 Kb)
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Title spat2014_manteltests_fordryad
Downloaded 25 times
Description Custom script to conduct mantel correlations on spatial subset of populations
Download spat2014_manteltests_fordryad.R (11.64 Kb)
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When using this data, please cite the original publication:

Lovell JT, Grogan KA, Sharbel TF, McKay JK (2014) Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae). Molecular Ecology 23(18): 4486-4497. http://dx.doi.org/10.1111/mec.12879

Additionally, please cite the Dryad data package:

Grogan KA, Sharbel TF, McKay JK, Lovell JT (2014) Data from: Mating system and environmental variation drive patterns of adaptation in Boechera spatifolia (Brassicaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.gp495
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