Data from: Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon

Warren IA, Ciborowski KL, Casadei E, Hazlerigg DG, Martin SAM, Sumner S, Jordan WC

Date Published: June 27, 2014

DOI: http://dx.doi.org/10.5061/dryad.h02b3

 

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Title Assembly of 454 reads from the brain
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Description Assembly of the 454 reads from the brains of Salmo salar parr
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Title Assembly of 454 reads from olfactory epithelium
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Description Assembly of 454 reads from olfactory epithelium from Salmo salar at the parr stage
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Title Assembly of 454 reads from pituitary gland
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Description Assembly of 454 reads from pituitary gland of Salmo salar at the parr stage
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Title Assembly of 454 reads from all tissues
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Description Assembly of 454 reads from brain, pituitary and olfactory epithelium of Salmo salar, at the parr stage.
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Title Python script for protein prediction and ka/ks calculations
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Download dNCalc_tBLASTx_clustal_ORF.py (16.81 Kb)
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Title Python script for comparing duplicates
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Description Includes selection of random sequence pairs.
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Title Python script for identifying duplicate pairs in Salmo salar
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Download duplicate_search_3.py (17.32 Kb)
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Title Python script for carrying out a reciprocal BLAST search
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Download reciprocalblast_allsteps.py (8.942 Kb)
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Title Processed 454 reads for brain
Description 454 reads for brain from Salmo salar in the parr stage. Trimmed for quality and adaptors (see paper for detail)
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Title Processed 454 reads for pituitary
Description 454 reads for pituitary from Salmo salar at the parr stage. Trimmed for quality and adaptors (see paper for detail)
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Title Processed 454 reads for olfactory epithelium
Description Processed 454 reads for olfactory epithelium from Salmo salar at the parr stage. Trimmed for quality and adaptors (see paper for detail)
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Title Python modules required for dNCalcs_tBLASTx_clustal_ORF.py
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When using this data, please cite the original publication:

Warren IA, Ciborowski KL, Casadei E, Hazlerigg DG, Martin SAM, Jordan WC, Sumner S (2014) Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Genome Biology and Evolution 6(7): 1790-1805. http://dx.doi.org/10.1093/gbe/evu131

Additionally, please cite the Dryad data package:

Warren IA, Ciborowski KL, Casadei E, Hazlerigg DG, Martin SAM, Sumner S, Jordan WC (2014) Data from: Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h02b3
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