Data from: Genetics at the verge of extinction: insights from the Iberian lynx

Casas-Marce M, Soriano L, López-Bao J, Godoy J

Date Published: October 7, 2013

DOI: http://dx.doi.org/10.5061/dryad.h02h0

 

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Title Lyp_2002-2007-GENEPOP
Downloaded 43 times
Description Microsatellite genotypes for a sample of Iberian lynx individuals born in Doñana (first pop) and Andujar (second pop) between the years 2002-2007. Indivdiuals are identified by their year of birth. Data is in GenePop format.
Download Lyp_2002-2007-GENEPOP.txt (27.67 Kb)
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Title Lyp_1995-2007_UR-GENEPOP
Downloaded 18 times
Description Microsatellite genotypes for a sample of Iberian lynx individuals in which known pairs of closely related individuals were avoided. Individuals are identified by an internal lab code and were born in Doñana (first pop) and Andujar (second pop). Data is GenePop format.
Download Lyp_1995-2007_UR-GENEPOP.txt (17.07 Kb)
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Title Lynx pardinus ATP8 haplotypes
Downloaded 14 times
Description Fasta file reporting the two partial ATP8 sequences found in Iberian lynx populations. The sequence was obtained by dideoxi sequencing of PCR products. Hapotype 1 was observed in all 23 individuals from Doñana population, while haplotype 2 was found in all 36 lynxes from Andújar population. Haplotypes 1 and 2 differ at a single site (site 42).
Download LypATP8.fas (534 bytes)
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Title Iberian lynx cytochrome b, partial sequence
Description The sequence was obtained by dideoxi sequencing of PCR products. All samples analysed (23 from Doñana and 36 from Andújar) yielded this same sequence.
Download KF561246 (0 bytes)
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Title Iberian lynx control region, partial sequence
Description The sequence was obtained by dideoxi sequencing of PCR products. All samples analysed (23 from Doñana and 36 from Andújar) yielded this same sequence.
Download KF561247 (0 bytes)
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Title Concatenated mitochondrial haplotypes
Downloaded 18 times
Description Fasta file with the two mitochondrial haplotypes found for Iberian lynx. Here haplotypes are defined by the concatenation of the three mitochondrial fragments: partial mitochondrial control region (1-602), partial cytochrome b (603-1299) and partial APT8 (1300-1488). Haplotype 1 was found in all 23 samples from Doñana and haplotype 2 was found in all 36 samples from Andújar.
Download ConcatenatedHaps.fas (3.269 Kb)
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When using this data, please cite the original publication:

Casas-Marce M, Soriano L, López-Bao J, Godoy J (2013) Genetics at the verge of extinction: insights from the Iberian lynx. Molecular Ecology 22(22): 5503–5515. http://dx.doi.org/10.1111/mec.12498

Additionally, please cite the Dryad data package:

Casas-Marce M, Soriano L, López-Bao J, Godoy J (2013) Data from: Genetics at the verge of extinction: insights from the Iberian lynx. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h02h0
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