Data from: Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions

He Q, Knowles LL

Date Published: March 24, 2016

DOI: http://dx.doi.org/10.5061/dryad.h0649.2

 

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Title msms_runningSettings
Downloaded 9 times
Description bootstrap ranges of parameters for 2La, 2Rb regions and msms simulation settings file
Download msms_runningSettings.zip (21.08 Kb)
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Title All individuals vcf
Downloaded 9 times
Description VCF file of SNPs of all individuals.
Download allIndividuals.vcf.gz (52.21 Mb)
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Title Sampling Info
Downloaded 7 times
Description Sampling location, species, karyotypes of all specimens.
Download SamplingInfo.csv (12.61 Kb)
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Title fastsimcoal_settings
Downloaded 19 times
Description fastsimcoal2 input files of different scenarios.
Download fastsimcoal_settings.zip (3.167 Kb)
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Title Inversion_DAPCRegion_stats
Downloaded 8 times
Description Region statistics of 2La and 2Rb and posterior probability of predicted scenarios.
Download Inversion_DAPCRegion_stats.xlsx (128.3 Kb)
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When using this data, please cite the original publication:

He Q, Knowles LL (2016) Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions. Molecular Ecology 25(10): 2226-2243. http://dx.doi.org/10.1111/mec.13619

Additionally, please cite the Dryad data package:

He Q, Knowles LL (2016) Data from: Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h0649.2
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