Data from: Phylogeographic inference using Bayesian model comparison across a fragmented chorus frog species complex

Barrow LN, Bigelow AT, Phillips CA, Lemmon EM

Date Published: August 10, 2015

DOI: http://dx.doi.org/10.5061/dryad.h2082

 

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Title Raw sequence reads
Downloaded 2 times
Description Raw Illumina sequence reads for 34 individuals, demultiplexed by individual barcode tags. Within each individual, PCR products from 23 nuclear loci and 4 mitochondrial loci were pooled and sequenced. Individual numbers, barcodes, and Field Numbers/localities corresponding to Table S1 are included in the ReadMe file.
Download README.xlsx (55.57 Kb)
Download ReadsByIndividual.zip (180.5 Mb)
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Title Sequence Alignments
Downloaded 1 time
Description Alignments for 4 mitochondrial fragments and 23 nuclear loci.
Download Alignments.zip (40.69 Kb)
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Title RAxML_mtDNA
Downloaded 1 time
Description RAxML infiles and results for analysis of 4 mtDNA fragments.
Download RAxML_mtDNA.zip (76.62 Kb)
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Title BEAST_mtDNA
Description BEAST xml file and results from analysis of 4 mtDNA fragments.
Download BEAST_mtDNA.zip (13.71 Mb)
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Title *BEAST_nDNA
Description Starbeast xml file and results from two separate runs analyzing 23 nDNA loci.
Download *BEAST_nDNA.zip (58.74 Mb)
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Title *BEAST_region
Description Starbeast xml file and results from analysis of 6 geograhpic regions across the P. streckeri/P. illinoensis species complex using 23 nDNA loci.
Download *BEAST_region.zip (18.04 Mb)
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Title BEAST_DivTime
Description Datafiles and results from divergence time estimation in BEAST using family-level hylid sequences and fossil calibrations.
Download BEAST_DivTime.zip (23.65 Mb)
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Title IMa2
Description Infiles and results from isolation with migration analyses conducted in IMa2 for divergence time estimation.
Download IMa2.zip (431.4 Kb)
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Title Msats_294ind
Description Microsatellite dataset with 14 loci genotyped for 294 individuals, and results from PCoA analysis of 228 individuals conducted in Genalex.
Download Msats_294ind.zip (818.8 Kb)
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Title Arlequin
Description Datafiles and results from Arlequin for Mantel tests and AMOVAs.
Download Arlequin.zip (94.66 Kb)
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Title Migrate-n
Description Infile, 24 parameter files, and 24 output files from population models tested in Migrate-n.
Download Migrate-n.zip (2.727 Mb)
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When using this data, please cite the original publication:

Barrow LN, Bigelow AT, Phillips CA, Lemmon EM (2015) Phylogeographic inference using Bayesian model comparison across a fragmented chorus frog species complex. Molecular Ecology 24(18): 4739–4758. http://dx.doi.org/10.1111/mec.13343

Additionally, please cite the Dryad data package:

Barrow LN, Bigelow AT, Phillips CA, Lemmon EM (2015) Data from: Phylogeographic inference using Bayesian model comparison across a fragmented chorus frog species complex. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h2082
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