Data from: In and out of refugia: historical patterns of diversity and demography in the North American Caesar’s mushroom species complex

Sánchez-Ramirez S, Tulloss RE, Guzmán-Davalos L, Cifuentes-Blanco J, Valenzuela R, Estrada-Torres A, Ruán-Soto F, Díaz-Moreno R, Hernández-Rico N, Torres-Gómez M, León H, Moncalvo J

Date Published: October 8, 2015

DOI: http://dx.doi.org/10.5061/dryad.h26v5

 

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Title Basic data
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Description This zip files contains six directories, each one includes basic data used for analyses. The "alignments" directory includes concatenated, phased, and unphased gene alignments. The "trees" directory includes MCC tree files in nexus format, produced by BEAST and starBEAST. Trees include individual gene trees, concatenated, and species trees. The "bpp" folder includes the control, tree, and imap files needed to run BP&P. The "maxent_input" folder has the filtered input coordinates used to run maxent in R. The "asr_div_data" has the geographic states used in RASP and data for MuSSE in a RData file. Finally, the "popsize_data" includes a table with summarized information about extant and ancestral population sizes and latitudes.
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When using this data, please cite the original publication:

Sánchez-Ramirez S, Tulloss RE, Guzmán-Davalos L, Cifuentes-Blanco J, Valenzuela R, Estrada-Torres A, Ruán-Soto F, Díaz-Moreno R, Hernández-Rico N, Torres-Gómez M, León H, Moncalvo J (2015) In and out of refugia: historical patterns of diversity and demography in the North American Caesar’s mushroom species complex. Molecular Ecology 24(23): 5938–5956. http://dx.doi.org/10.1111/mec.13413

Additionally, please cite the Dryad data package:

Sánchez-Ramirez S, Tulloss RE, Guzmán-Davalos L, Cifuentes-Blanco J, Valenzuela R, Estrada-Torres A, Ruán-Soto F, Díaz-Moreno R, Hernández-Rico N, Torres-Gómez M, León H, Moncalvo J (2015) Data from: In and out of refugia: historical patterns of diversity and demography in the North American Caesar’s mushroom species complex. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h26v5
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