Data from: Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, de Casas RR

Date Published: May 20, 2013

DOI: http://dx.doi.org/10.5061/dryad.h4070

 

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Title Saxafragales_Supermatrix.phy
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Description The file "Saxafragales_Supermatrix.phy" contains the full supermatrix data set in phylip format.
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Title Saxifragales.R8s.tre
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Description "Saxifragales.R8s.tre" contains the estimated ML tree and 200 ML botstrap trees for the data set. All of the trees in "Saxifragales.R8s.tre" have ultrametric branch lengths corresponding to time (in million years), obtained by penalized likelihood analysis in R8s.
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Title Saxifragales_Accession_Table
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Description "Saxifragales_Accession_Table.txt" gives the GenBank id number for each sequence used in the supermatrix.
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Title GeneLocationsInAlignment
Downloaded 33 times
Description The file "GeneLocationsInAlignment.txt" tells which genes correspond to which parts of the alignment in the supermatrix.
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Title Saxifragales.table1(POLYMRPHS)
Downloaded 30 times
Description Saxifragales.table1(POLYMRPHS).xlsb and Saxifragales.table2.(SIMPLE)_.xlsb contain the character data used in the ancestral state reconstruction analyses.
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Title Saxifragales.table2.(SIMPLE)_
Downloaded 32 times
Description Saxifragales.table1(POLYMRPHS).xlsb and Saxifragales.table2.(SIMPLE)_.xlsb contain the character data used in the ancestral state reconstruction analyses.
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When using this data, please cite the original publication:

Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, de Casas RR (2013) Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. American Journal of Botany 100(5): 916-929. http://dx.doi.org/10.3732/ajb.1300044

Additionally, please cite the Dryad data package:

Soltis DE, Mort ME, Latvis M, Mavrodiev EV, O'Meara BC, Soltis PS, Burleigh JG, de Casas RR (2013) Data from: Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h4070
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