Data from: Correlated evolution of body and fin morphology in the cichlid fishes

Feilich KL

Date Published: July 22, 2016

DOI: http://dx.doi.org/10.5061/dryad.h4k6f

 

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Title Kmult Phylogenetic Signal Calculations (R Workspace)
Downloaded 5 times
Description R workspace containing phylogeny-specific trait datasets (body, caudal fin, dorsal fin, anal fin) and pruned trees corresponding to each dataset.
Download 06.23.2016_Kmult_physignal_wkspc.RData (342.5 Kb)
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Title Kmult Phylogenetic Signal Calculations (R Code)
Downloaded 11 times
Description R code corresponding to Kmult phylogenetic signal analyses on trait data given in the R workspace.
Download 06.23.2016_Kmult_physignal_wkspc_code.txt (781 bytes)
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Title Phylogenetic PCA analyses (R workspace)
Downloaded 26 times
Description R workspace containing phylogeny-specific datasets and pruned trees for each dataset in order to calculate phylogenetic principle components analysis
Download 06.23.2016_phylPCA_wkspc.RData (169.9 Kb)
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Title Phylogenetic PCA analyses (R code)
Downloaded 13 times
Description R code to conduct phylogenetic PCA analyses on the data in the R workspace
Download 06.23.2016_phylPCA_wkspc_code.txt (597 bytes)
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Title PCA Analyses (R workspace)
Downloaded 5 times
Description Size corrected morphological data for principle component analysis of body, caudal, dorsal, and anal fin shape.
Download 06.23.2016_PCA_wkspc.RData (205.5 Kb)
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Title PCA Analyses (R code)
Downloaded 7 times
Description Code to perform principle component analyses on the corresponding R dataset
Download 06.23.2016_PCA_wkspc_code.txt (407 bytes)
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Title Disparity Through Time Analyses (R workspace)
Downloaded 13 times
Description Data to conduct disparity through time analyses on phylogeny-specific morphological datasets for body, caudal fin, dorsal fin, and anal fin shape.
Download 06.23.2016_DTT_wkspc.RData (63.99 Kb)
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Title Disparity Through Time Analyses (R code)
Downloaded 13 times
Description R code to conduct disparity through time analyses on corresponding datasets.
Download 06.23.2016_DTT_wksp_code.txt (689 bytes)
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Title Partial Least Squares Analyses (R workspace)
Downloaded 5 times
Description Morphological data for all pairwise PLS analyses.
Download 06.23.2016_PLS_wkspc.RData (210.2 Kb)
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Title Partial Least Squares Analyses (R code)
Downloaded 6 times
Description R code to conduct all pairwise partial least squares canonical analyses on the corresponding data.
Download 06.23.2016_PLS_wkspc_code.txt (2.362 Kb)
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Title Partial Least Squares Analyses on Independent Contrasts (R workspace)
Downloaded 5 times
Description Morphological data and trees required to calculate phylogenetic independent contrasts and run PLS-CA analyses for all possible pairwise comparisons using both reference phylogenies.
Download 06.23.2016_PLSonPIC_wkspc.RData (176.8 Kb)
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Title Partial Least Squares Analyses on Independent Contrasts (R code)
Downloaded 5 times
Description R code required to calculate Phylogenetic Independent Contrasts, merge datasets and run all pairwise PLS-CA analyses on morphological data and trees included in the associated R workspace.
Download 06.23.2016_PLSonPICs_wkspc_code.txt (5.653 Kb)
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Title Convergence Analyses (R workspace)
Downloaded 2 times
Description Phylogenetic principal component scores and trees used to test for and calculate the strength of convergence using the SURFACE and windex packages in R.
Download 06.23.2016_SURFACE_wkspc.RData (10.92 Kb)
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Title Convergence Analyses (R code)
Downloaded 7 times
Description R code used to conduct tests for convergence in R using the SURFACE and windex packages.
Download 07.06.2016_SURFACEwindex_wkspc_code.txt (9.745 Kb)
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Title Raw and Normalized CIchlid Morphology Data
Downloaded 26 times
Description All of the raw data, specimen data, and regression normalized data used in the analyses here. Analysis-specific subsets and associated code are provided as R workspaces.
Download AllCichlidMorphData_Dryadupload.csv (205.7 Kb)
Download README.txt (1.641 Kb)
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When using this data, please cite the original publication:

Feilich KL (2016) Correlated evolution of body and fin morphology in the cichlid fishes. Evolution 70(10): 2247-2267. http://dx.doi.org/10.1111/evo.13021

Additionally, please cite the Dryad data package:

Feilich KL (2016) Data from: Correlated evolution of body and fin morphology in the cichlid fishes. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h4k6f
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