Data from: De novo transcriptome assembly for the lobster Homarus americanus and characterization of differential gene expression across nervous system tissues

McGrath LL, Vollmer SV, Kaluziak ST, Ayers J

Date Published: January 18, 2016

DOI: http://dx.doi.org/10.5061/dryad.h617h

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Transcriptome assembly for American lobster Homarus americanus
Downloaded 34 times
Description Transcriptome assembly for the American lobster, Homarus americanus. Assembly conducted in Trinity (version 8-14-2013) from 145 million single-end reads (Illumina HiSeq 2000) from mRNA extracted from nervous system, heart, and muscle tissues of Homarus americanus (2012). For additional information, please email Lara McGrath at lara.l.mcgrath [at] gmail.com
Download Homarusamericanustranscriptome_LLM12-20-2015.fa (106.6 Mb)
Details View File Details
Title Read Counts for Homarus americanus transcriptome samples
Downloaded 23 times
Description Read counts from read mapping conducted in Bowtie (version 0.12.7) against de novo assembled Homarus americanus transcriptome. For identification of samples: U= untreated, P=proctolin-treated, M=muscle, B= brain, H= heart, A= abdominal ganglia, and number indicates individual lobster. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.com
Download Homarusamericanustranscriptome_rawreadcou...15.csv (5.014 Mb)
Details View File Details
Title Annotations for Homarus americanus transcriptome
Downloaded 38 times
Description Protein annotations from tBlast of de novo assembled Homarus americanus transcriptome against NCBI, and UniprotKB Swiss-Prot and TrEMBL databases. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.com
Download Homarusamericanustranscriptome_annotation...15.csv (23.57 Mb)
Details View File Details
Title Count Tables in R
Downloaded 13 times
Description R script for counting differentially expressed and up- or down-regulated contigs for a given category. Useful for interpreting expression changes for multiple unique contigs within a category (i.e. multiple proteins of an ion channel). Written by Lara McGrath. For more information, email Lara McGrath at lara.l.mcgrath [at] gmail.com
Download counttables_LLM8-8-2015.R (1.748 Kb)
Details View File Details

When using this data, please cite the original publication:

McGrath LL, Vollmer SV, Kaluziak ST, Ayers J (2016) De novo transcriptome assembly for the lobster Homarus americanus and characterization of differential gene expression across nervous system tissues. BMC Genomics 17: 63. http://dx.doi.org/10.1186/s12864-016-2373-3

Additionally, please cite the Dryad data package:

McGrath LL, Vollmer SV, Kaluziak ST, Ayers J (2016) Data from: De novo transcriptome assembly for the lobster Homarus americanus and characterization of differential gene expression across nervous system tissues. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h617h
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: