Data from: Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils

Schirrmeister BE, Gugger M, Donoghue PCJ

Date Published: September 17, 2015

DOI: http://dx.doi.org/10.5061/dryad.h75ht.2

 

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Title Chroococcidiopsis sp. PCC 8201
Downloaded 5 times
Description Protein sequences of Chroococcidiopsis sp. PCC 8201. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Chroococcidiopsis sp. PCC 8201.faa (2.663 Mb)
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Title Geitlerinema sp. PCC 8501
Downloaded 3 times
Description Protein sequences of Geitlerinema sp. PCC 8501. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Geitlerinema sp. PCC 8501.faa (1.690 Mb)
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Title Leptolyngbya sp. PCC 73110
Downloaded 3 times
Description Protein sequences of Leptolyngbya sp. PCC 73110. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Leptolyngbya sp. PCC 73110.faa (2.535 Mb)
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Title Chroococcidiopsis sp. PCC 7434
Downloaded 6 times
Description Protein sequences of Chroococcidiopsis sp. PCC 7434. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Chroococcidiopsis sp. PCC 7434.faa (2.410 Mb)
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Title Pseudanabaena sp. PCC 7704
Downloaded 3 times
Description Protein sequences of Pseudanabaena sp. PCC 7704. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Pseudanabaena sp. PCC 7704.faa (1.432 Mb)
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Title Limnothrix redekei PCC 9416
Downloaded 4 times
Description Protein sequences of Limnothrix redekei PCC 9416. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Limnothrix redekei PCC 9416.faa (2.138 Mb)
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Title Symploca sp. PCC 8002
Downloaded 4 times
Description Protein sequences of Symploca sp. PCC 8002. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Symploca sp. PCC 8002.faa (2.061 Mb)
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Title Synechocystis sp. PCC 9635
Downloaded 1 time
Description Protein sequences of Synechocystis sp. PCC 9635. Annotated with Prokka (http://www.vicbioinformatics.com/software.prokka.shtml).
Download Synechocystis sp. PCC 9635.faa (1.670 Mb)
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Title Chroococcidiopsis sp. PCC 8201
Downloaded 4 times
Description Genome sequence of Chroococcidiopsis sp. PCC 8201
Download Chroococcidiopsis sp. PCC 8201.fna (7.827 Mb)
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Title Geitlerinema sp. PCC 8501
Downloaded 1 time
Description Genome sequence of Geitlerinema sp. PCC 8501
Download Geitlerinema sp. PCC 8501.fna (5.429 Mb)
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Title Leptolyngbya sp. PCC 73110
Downloaded 4 times
Description Genome sequence of Leptolyngbya sp. PCC 73110
Download Leptolyngbya sp. PCC 73110.fna (7.316 Mb)
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Title Chroococcidiopsis sp. PCC 7434
Downloaded 5 times
Description Genome sequence of Chroococcidiopsis sp. PCC 7434
Download Chroococcidiopsis sp. PCC 7434.fna (7.072 Mb)
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Title Pseudanabaena sp. PCC 7704
Downloaded 3 times
Description Genome sequence of Pseudanabaena sp. PCC 7704
Download Pseudanabaena sp. PCC 7704.fna (4.229 Mb)
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Title Limnothrix redekei PCC 9416
Downloaded 6 times
Description Genome sequence of Limnothrix redekei PCC 9416
Download Limnothrix redekei PCC 9416.fna (6.385 Mb)
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Title Symploca sp. PCC 8002
Downloaded 7 times
Description Genome sequence of Symploca sp. PCC 8002
Download Symploca sp. PCC 8002.fna (6.512 Mb)
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Title Synechocystis sp. PCC 9635
Downloaded 4 times
Description genome sequence of Synechocystis sp. PCC 9635
Download Synechocystis sp. PCC 9635.fna (4.891 Mb)
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Title APPENDIX S1. Names of genes used in the phylogenomic analyses
Downloaded 4 times
Description Highly conserved proteins, which have been identified via similarity searches. In total 756 proteins are present in all 65 cyanobacterial taxa used in this study. Concatenated gene alignments were used for the phylogenomic tree reconstruction.
Download APPENDIX S1. Names of genes used in the p...es.txt (82.65 Kb)
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Title APPENDIX S2. Multiple sequence alignment
Downloaded 3 times
Description Multiple sequence alignment used for tree reconstruction presented in phylip format.
Download APPENDIX S2. Multiple sequence alignment.phy (12.85 Mb)
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Title APPENDIX S3. Trees presented in this study
Downloaded 5 times
Description (a) Phylogenomic Maximum Likelihood tree. (b) Ribosomal Maximum Likelihood tree. (c) Trees with divergence dates.
Download APPENDIX S3. Trees presented in this study.txt (23.12 Kb)
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When using this data, please cite the original publication:

Schirrmeister BE, Gugger M, Donoghue PCJ (2015) Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils. Palaeontology 58(5): 769-785. http://dx.doi.org/10.1111/pala.12178

Additionally, please cite the Dryad data package:

Schirrmeister BE, Gugger M, Donoghue PCJ (2015) Data from: Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.h75ht.2
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