Data from: An empirical comparison of a character-based and a coalescent-based approach to species delimitation in a young avian complex

 

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Title Input and output from BPP analyses
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Description Compressed file containing input and output files from BPP analyses of the light-vented/Taiwan bulbul (Pycnonotus sinensis/P. taivanus) complex. Analyses include 4 taxa analyses, 5 taxa analyses, 5 taxa analyses using two alternative tree topologies, and geographic cluster analyses. Geographic cluster analyses include seperate analyses for sinensis, hainanus, and taivanus. All analyses were run using low, middle, and high theta priors.
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Title 12630 locus phased alignment
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Description 12630 locus phased alignment in fasta format
Download 12630 Align Phased.fas (24.46 Kb)
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Title 13403 locus phased alignment
Downloaded 7 times
Description 13403 locus phased alignment in fasta format
Download 13403 Align Phased.fas (38.71 Kb)
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Title 14572 locus phased alignment
Downloaded 9 times
Description 14572 locus phased alignment in fasta format
Download 14572 Align Phased.fas (37.26 Kb)
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Title 15463 locus phased alignment
Downloaded 9 times
Description 15463 locus phased alignment in fasta format
Download 15463 Align Phased.fas (36.06 Kb)
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Title 17898 locus phased alignment
Downloaded 11 times
Description 17898 locus phased alignment in fasta format
Download 17898 Align Phased.fas (30.66 Kb)
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Title 22187 locus phased alignment
Downloaded 9 times
Description 22187 locus phased alignment in fasta format
Download 22187 Align Phased.fas (26.66 Kb)
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Title 23361 locus phased alignment
Downloaded 9 times
Description 23361 locus phased alignment in fasta format
Download 23361 Align Phased.fas (26.16 Kb)
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Title 24972 locus phased alignment
Downloaded 8 times
Description 24972 locus phased alignment in fasta format
Download 24972 Align Phased.fas (35.46 Kb)
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Title 25442 locus phased alignment
Downloaded 7 times
Description 25442 locus phased alignment in fasta format
Download 25442 Align Phased.fas (33.11 Kb)
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Title 25613 locus phased alignment
Downloaded 8 times
Description 25613 locus phased alignment in fasta format
Download 25613 Align Phased.fas (25.16 Kb)
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Title 27331 locus phased alignment
Downloaded 6 times
Description 27331 locus phased alignment in fasta format
Download 27331 Align Phased.fas (41.26 Kb)
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Title 27818 locus phased alignment
Downloaded 7 times
Description 27818 locus phased alignment in fasta format
Download 27818 Align Phased.fas (32.66 Kb)
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Title MUSK locus phased alignment
Downloaded 9 times
Description MUSK locus phased alignment in fasta format
Download MUSK Align Phased.fas (31.06 Kb)
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Title ND2 locus alignment
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Description ND2 locus alignment in fasta format
Download ND2 Align Full.phy (73.92 Kb)
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Title ND2 locus alignment-trimmed
Downloaded 7 times
Description ND2 locus alignment that has been trimmed to include only the 25 individuals sequenced for nuclear introns. The full (1041 bp) ND2 gene was sequenced for these individuals.
Download ND2 Align Trimmed.fasta (26.33 Kb)
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Title Morphological data matrix
Downloaded 14 times
Description A table described the four observed plumage character states for all scored individuals.
Download CHBU Plumage.xlsx (57.45 Kb)
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When using this data, please cite the original publication:

McKay BD, Mays Jr HL, Wu Y, Li H, Yao C, Nishiumi I, Zou F (2013) An empirical comparison of a character-based and a coalescent-based approach to species delimitation in a young avian complex. Molecular Ecology 22(19): 4943–4957. http://dx.doi.org/10.1111/mec.12446

Additionally, please cite the Dryad data package:

McKay BD, Mays Jr. HL, Wu Y, Li H, Yao C, Nishiumi I, Zou F (2013) Data from: An empirical comparison of a character-based and a coalescent-based approach to species delimitation in a young avian complex. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.hk45m
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