Data from: Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

Sheppard SK, Cheng L, Méric G, de Haan CPA, Llarena A, Marttinen P, Vidal A, Ridley A, Clifton-Hadley F, Connor TR, Strachan NJC, Forbes K, Colles FM, Jolley KA, Bentley SD, Maiden MCJ, Hänninen M, Parkhill J, Hanage WP, Corander J

Date Published: March 28, 2014

DOI: http://dx.doi.org/10.5061/dryad.hk860

 

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Title Assembled 128 Campylobacter whole genome sequences
Downloaded 41 times
Description 128 Campylobacter whole genomes sequenced using a Illumina HiSeq 2000 and assembled using Velvet. Filenames refer to IDs in Table S1 in the associated publication.
Download MolEcol2014.zip (64.16 Mb)
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Title Complete set of available STs for C. jejuni (sequences)
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Description Sequences of every alleles for MLST profiles of 3,834 STs present in the pubMLST Campylobacter database as of the 26th of May 2011 and used in the associated publication.
Download Complete_set_of_available_STs_for_Cjejuni...s).xls (1.455 Mb)
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Title Complete host associations with C. jejuni ST clonal complexes
Downloaded 32 times
Description Complete host associations with C. jejuni ST clonal complexes, using data extracted from pubMLST as of 26th May 2011, used in the associated publication to produce Fig. 1B.
Download Complete_host_associations_with_ST_clonal_....xlsx (411.2 Kb)
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When using this data, please cite the original publication:

Sheppard SK, Cheng L, Méric G, de Haan CPA, Llarena A, Marttinen P, Vidal A, Ridley A, Clifton-Hadley F, Connor TR, Strachan NJC, Forbes K, Colles FM, Jolley KA, Bentley SD, Maiden MCJ, Hänninen M, Parkhill J, Hanage WP, Corander J (2014) Cryptic ecology among host generalist Campylobacter jejuni in domestic animals. Molecular Ecology 23(10): 2442–2451. http://dx.doi.org/10.1111/mec.12742

Additionally, please cite the Dryad data package:

Sheppard SK, Cheng L, Méric G, de Haan CPA, Llarena A, Marttinen P, Vidal A, Ridley A, Clifton-Hadley F, Connor TR, Strachan NJC, Forbes K, Colles FM, Jolley KA, Bentley SD, Maiden MCJ, Hänninen M, Parkhill J, Hanage WP, Corander J (2014) Data from: Cryptic ecology among host generalist Campylobacter jejuni in domestic animals. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.hk860
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