Data from: An extreme case of plant-insect codiversification: figs and fig-pollinating wasps

Cruaud A, Rønsted N, Chantarasuwan B, Chou LS, Clement WL, Couloux A, Cousins B, Genson G, Harrison RD, Hanson PE, Hossaert-McKey M, Jabbour-Zahab R, Jousselin E, Kerdelhué C, Kjellberg F, Lopez-Vaamonde C, Peebles J, Pereira RAS, Schramm T, Ubaidillah R, van Noort S, Weiblen GD, Yang D, Peng Y, Yodpinyanee A, Libeskind-Hadas R, Cook JM, Rasplus J, Savolainen V

Date Published: October 16, 2012

DOI: http://dx.doi.org/10.5061/dryad.hr620

 

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Title Agaonidae_data
Downloaded 155 times
Description Agaonidae. Combined matrix of 6 genes. Two nuclear protein-coding genes [F2 copy of elongation factor-1a (EF1a, 516 bp), Wingless (Wg, 403 bp)]; two mitochondrial protein-coding genes [cytochrome c oxidase subunit I (COI, 1536 bp), cytochrome b (Cyt b, 749 bp)] and two ribosomal genes [28S rRNA (D2–D3 and D4–D5 expansion regions, 1520 bp), 18S rRNA (variable regions V3–5, 787 bp)].
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Title TreeRAxML_Agaonidae
Downloaded 90 times
Description ML analyses and associated bootstrapping (1,000 replicates) using the MPI-parallelized RAxML 7.0.4 software (Stamatakis, 2006b). GTRCAT approximation of models (Stamatakis, 2006a) was used for ML boostrapping (1,000 replicates).
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Title Ficus_data
Downloaded 116 times
Description Matrix of using five genes: ITS (891 bp), ETS (528 bp), glyceraldehyde 3-phosphate dehydrogenase (G3pdh, 769 bp), chloroplast expressed glutamine synthetase region (ncpGS, 1630 bp) and granule-bound starch synthase (waxy region, 1734 bp).
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Title TreeRAxML_Ficus
Downloaded 97 times
Description ML analyses and associated bootstrapping (1,000 replicates) using the MPI-parallelized RAxML 7.0.4 software (Stamatakis, 2006b). GTRCAT approximation of models (Stamatakis, 2006a) was used for ML bootstrapping (1,000 replicates.)
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Title Cruaud et al_SI
Downloaded 394 times
Description This document comprises the following items: - APPENDIX S1: Additional discussion relative to the phylogenetic position of the genus Tetrapus (Agaonidae). - APPENDIX S2: Review of the literature on fig fossils (leaves, woods, seeds and fruits). - SUPPORTING FIGURES S1-S14. - SUPPORTING TABLES S1-S6.
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Title BEAST_Agaonidae
Downloaded 93 times
Description BEAST control file for Agaonidae
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Title BEAST_Ficus
Downloaded 81 times
Description BEAST control file for Ficus
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Title Appendix S1-Ficus material
Downloaded 375 times
Description List of Ficus and outgroup species included in the present study. Voucher and taxonomic information, sampling localities and GenBank accession numbers are provided. Sequences produced for this study are indicated in bold font.
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Title Appendix S2- wasp material
Downloaded 160 times
Description List of Agaonidae and outgroup species included in this study. Voucher numbers, taxonomic information, natural host-fig, sampling localities and GenBank accession numbers are provided.
Download Appendix S2- wasp material.doc (472.0 Kb)
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Title Cruaud et al_SI
Downloaded 395 times
Description This document comprises the following items: - APPENDIX S3: Additional discussion relative to the phylogenetic position of the genus Tetrapus (Agaonidae). - APPENDIX S4: Review of the literature on fig fossils (leaves, woods, seeds and fruits). - SUPPORTING FIGURES S1-S14. - SUPPORTING TABLES S1-S6.
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Title TreeBASE:S13315
Description A link to the related TreeBASE study
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When using this data, please cite the original publication:

Cruaud A, Rønsted N, Chantarasuwan B, Chou LS, Clement WL, Couloux A, Cousins B, Genson G, Harrison RD, Hanson PE, Hossaert-McKey M, Jabbour-Zahab R, Jousselin E, Kerdelhué C, Kjellberg F, Lopez-Vaamonde C, Peebles J, Peng Y, Pereira RAS, Schramm T, Ubaidillah R, van Noort S, Weiblen GD, Yang D, Yodpinyanee A, Libeskind-Hadas R, Cook JM, Rasplus J, Savolainen V (2012) An extreme case of plant-insect codiversification: figs and fig-pollinating wasps. Systematic Biology 61(6): 1029-1047. http://dx.doi.org/10.1093/sysbio/sys068

Additionally, please cite the Dryad data package:

Cruaud A, Rønsted N, Chantarasuwan B, Chou LS, Clement WL, Couloux A, Cousins B, Genson G, Harrison RD, Hanson PE, Hossaert-McKey M, Jabbour-Zahab R, Jousselin E, Kerdelhué C, Kjellberg F, Lopez-Vaamonde C, Peebles J, Pereira RAS, Schramm T, Ubaidillah R, van Noort S, Weiblen GD, Yang D, Peng Y, Yodpinyanee A, Libeskind-Hadas R, Cook JM, Rasplus J, Savolainen V (2012) Data from: An extreme case of plant-insect codiversification: figs and fig-pollinating wasps. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.hr620
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