Data from: Tracing the dynamics of gene transcripts after organismal death

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA

Date Published: January 25, 2017

DOI: http://dx.doi.org/10.5061/dryad.hv223

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Title MiceProbesParameters
Downloaded 20 times
Description 1. Columns: ProbeID, a, b, R2, CurveType. The CurveType refers to whether the best curve was Langmuir (LG) or Freundlich (F). The empirical parameters a and b in the Freundlich equation refer to the pre-exponent and the exponent (Y=a*Xb) respectively. The empirical parameters a and b in the Langmuir equation Y=Ymax*K*X/(1+K*X), where a = 1/(K*Ymax); b = 1/Ymax. The R2 refers to the fit of the empirical data to curve.
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Title FishProbesParameters
Downloaded 10 times
Description 1. Columns: ProbeID, a, b, R2, CurveType. The CurveType refers to whether the best curve was Langmuir (LG) or Freundlich (F). The empirical parameters a and b in the Freundlich equation refer to the pre-exponent and the exponent (Y=a*Xb) respectively. The empirical parameters a and b in the Langmuir equation Y=Ymax*K*X/(1+K*X), where a = 1/(K*Ymax); b = 1/Ymax. The R2 refers to the fit of the empirical data to curve.
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Title Mouse_liver_Log10_AllProfiles
Downloaded 14 times
Description Columns: ProbeID, gene transcript abundances at postmortem stages 1 to 7.
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Title Mouse_brain_Log10_AllProfiles.txt
Downloaded 15 times
Description Columns: ProbeID, gene transcript abundances at postmortem stages 1 to 7.
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Title Fish_Log10_AllProfiles
Downloaded 22 times
Description Columns: ProbeID, gene transcript abundances at postmortem stages 1 to 10.
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Title MiceProbesSeq
Downloaded 61 times
Description Columns: ProbeID, gene transcript abundances at postmortem stages 1 to 10.
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Title FishProbesSeq
Downloaded 8 times
Description ProbeIDs and DNA sequences.
Download FishProbesSeq.txt (478.5 Kb)
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Title Gene_annotation_lit_refs
Downloaded 22 times
Description MS Excel spreadsheet of zebrafish and mouse probe/gene annotations and functional categorizations: File_GenesLitRefs. Columns: microarray probe names, phylostrata, NCBI gene names, cluster, regulator, response, functional categorization fields 1 to 4, formal gene name, References.
Download Gene_annotation_lit_refs.xls (402.9 Kb)
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When using this data, please cite the original publication:

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA (2017) Tracing the dynamics of gene transcripts after organismal death. Open Biology 7(1): 160267. http://dx.doi.org/10.1098/rsob.160267

Additionally, please cite the Dryad data package:

Pozhitkov AE, Neme R, Domazet-Lošo T, Leroux BG, Soni S, Tautz D, Noble PA (2017) Data from: Tracing the dynamics of gene transcripts after organismal death. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.hv223
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