Data from: Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck

Lavretsky P, Engilis Jr. A, Eadie JM, Peters JL

Date Published: April 23, 2015

DOI: http://dx.doi.org/10.5061/dryad.j05b3

 

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Title PHASED.FASTA.FILES
Downloaded 62 times
Description Fasta files include the mitochondrial control region and 19 phased nuclear loci for 15 Hawaiian duck, 21 Laysan duck, and 25 mallard individuals (see Supporting information Table S1 & S2 for marker information).
Download PHASED.FASTA.FILES.zip (34.62 Kb)
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Title IMa2.Input.FILES
Downloaded 74 times
Description IMa2 input files consisting of 19 nuclear markers filtered for the largest non-recombinant fragment in the program IMgc for 15 Hawaiian duck, 21 Laysan duck, and 25 mallard individuals. The two files differ in starting phylogenetic relationships with mtDNA-like topology (Hawaiian duck sister to mallard) and nuDNA-like topology (Hawaiian duck sister to Laysan duck).
Download IMa2.Input.FILES.zip (27.92 Kb)
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Title STRUCTURE.Input.FILES
Downloaded 31 times
Description Input files for STRUCTURE runs. Three files include analyses between 15 Hawaiian duck, 21 Laysan duck, and 25 mallard samples with data sets where (a) recombination was ignored, (b) loci were filtered for recombination, and (c) 17 diagnostic SNPs ascertained by comparing Laysan ducks and mallards (Table S2). Similar to the latter file, a fourth file (Structure.Multi-species.SNP.Input.FILE.stru) includes 16 diagnostic SNPs assayed across 8 taxonomic units of the mallard complex.
Download STRUCTURE.Input.FILES.zip (8.619 Kb)
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Title SplitsTree.Input.FILE
Downloaded 17 times
Description Fasta file of 19 nuclear loci concatenated for a total of 6,682 aligned nucleotides for 15 Hawaiian duck, 21 Laysan duck, and 25 mallard samples.
Download Concatenated.Nuclear.file.fas (408.2 Kb)
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When using this data, please cite the original publication:

Lavretsky P, Engilis Jr A, Eadie JM, Peters JL (2015) Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck. Journal of Evolutionary Biology 28(5): 1005-1015. http://dx.doi.org/10.1111/jeb.12637

Additionally, please cite the Dryad data package:

Lavretsky P, Engilis Jr. A, Eadie JM, Peters JL (2015) Data from: Genetic admixture supports an ancient hybrid origin of the endangered Hawaiian duck. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.j05b3
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