Data from: Pleistocene expansion of the bipolar lichen Cetraria aculeata into the Southern hemisphere

 

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Title 1_Complete_data_matrix
Downloaded 19 times
Description Full dataset including all individuals. It includes geographic information, haplotype assignment per locus, Genebank accesions, Assignment to Mixture clusters, MLC and SLC obtained in BAPS
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Title 2_ITS_complete_rooted
Downloaded 16 times
Description ITS alignment in Nexus format
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Title 2_GPD_complete_rooted
Downloaded 11 times
Description GPD alignment in nexus format
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Title 3_mtlsu_complete_rooted
Downloaded 13 times
Description mtLSU alignment in nexus format
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Title 4_ITS_haplotypes
Downloaded 11 times
Description ITS alignment collapsed to haplotypes
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Title 4_GPD_haplotypes
Downloaded 7 times
Description GPD alignment collapsed to haplotypes
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Title 4_mtLSU_haplotypes
Downloaded 8 times
Description mtLSU alignment collapsed to haplotypes
Download mtLSU_haplotypes.nex (13.14 Kb)
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Title 5_ITS_Simmap_60seqs
Downloaded 10 times
Description Dataset collapsed to haplotypes per geographic region to be used for Stochastic mapping
Download ITS60seqsA.nex (30.73 Kb)
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Title 5_GPD_Simmap_47seqs
Downloaded 8 times
Description Dataset collapsed to haplotypes per geographic region to be used for Stochastic mapping
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Title 5_mtlsu_Simmap_27seqs
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Description Dataset collapsed to haplotypes per geographic region to be used for Stochastic mapping
Download mtlsu27seqsA.nex (23.11 Kb)
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Title 6_ITS_StochasticMaps_transitions
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Description Final log of the Stochastic character mapping simulations, it was used to generate plots of transitions through time.
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Title 6_GPD_StochasticMaps_transitions
Downloaded 18 times
Description Final log of the Stochastic character mapping simulations.
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Title 6_mtLSU_StochasticMaps_transitions
Downloaded 14 times
Description Final log of the Stochastic character mapping simulations.
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Title 6_README_Plot_Transitions
Downloaded 17 times
Description R file used to plot transition through time plots
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When using this data, please cite the original publication:

Fernandez-Mendoza F, Printzen C (2013) Pleistocene expansion of the bipolar lichen Cetraria aculeata into the Southern hemisphere. Molecular Ecology 22(7): 1961–1983. http://dx.doi.org/10.1111/mec.12210

Additionally, please cite the Dryad data package:

Fernandez-Mendoza F, Printzen C (2013) Data from: Pleistocene expansion of the bipolar lichen Cetraria aculeata into the Southern hemisphere. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.j57c0
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