Data from: Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin

Viricel A, Rosel PE

Date Published: September 17, 2014

DOI: http://dx.doi.org/10.5061/dryad.j697v

 

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Title GSI files
Downloaded 69 times
Description -"GSI_assignments_labels" = cluster assignment for each individual included in this analysis - "sfro_GSI_tree.phy" = phylip file containing sequences for all individuals included in this analysis -"100rooted.tre" = 100 bootstrap trees generated using PhyML and used to calculate the gsiT
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Title IM files
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Description IM input file and command line: "Sfro_2POPs_MtCR_IM" = IM input file "IM_command_line" = IM command line
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Title R script: R_Get_sample_Depth
Downloaded 5 times
Description "R_Get_sample_Depth.R" = This script was used to retrieve the depth of each sampling location.
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Title R script: R_Get_sample_Value
Downloaded 8 times
Description "R_Get_sample_Value.R" = This script was used to retrieve values of environmental data (present code: example for the turbidity data) for each sampling location.
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Title Sample_location_micros
Downloaded 44 times
Description "Sample_location_Micros.xls" = file containing each sample information (sex, collection date, region of collection) and microsatellite data
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Title Viricel_mtDNA_alignment
Downloaded 3 times
Description "Viricel_mtDNA_alignment.fasta" = alignment of all mitochondrial DNA haplotypes (including heteroplasmic sequences)
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When using this data, please cite the original publication:

Viricel A, Rosel PE (2014) Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin. Molecular Ecology 23(20): 5018-5035. http://dx.doi.org/10.1111/mec.12923

Additionally, please cite the Dryad data package:

Viricel A, Rosel PE (2014) Data from: Hierarchical population structure and habitat differences in a highly mobile marine species: the Atlantic spotted dolphin. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.j697v
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