Data from: Horizontal gene transfer and genome evolution in Methanosarcina

Garushyants SK, Kazanov MD, Gelfand MS

Date Published: June 12, 2015

DOI: http://dx.doi.org/10.5061/dryad.j69p2

 

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Title Orthology groups for Methanosarcinaceae species
Downloaded 3 times
Description This archive contains initial groups of orthologues proteins (GOPs) utilized in the research.Here you can find GOPs for 3 Methanosarcina species (Methanosarcina acetivorans CA, Methanosarcina barkeri Fusaro, and Methanosarcina mazei Go1) and 6 Methanosarcinaceae species: 3 Methanosarcina and Methanococcoides burtonii DSM 6242, Methanohalobium evestigatum Z-7303, and Methanohalophilus mahii DSM 5219. GOPs were calculated by bidirectional best hits (BBHs) approach. The detailed description of method is provided in the original manuscript.
Download GOPs.tar (14.41 Mb)
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Title Horizontally transferred genes in Methanosarcina spp.
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Description This archive contains detailed information about horizontally transferred genes in Methanosarcina, such as list of genes of bacterial origin in 3 Methanosarcina species, corresponding alignments (produced by MUSCLE), neighbor-joining (NJ) trees with 100 bootstrap replicas generated by ClustalW software with default parameters (BLOSUM distance matrix), and a maximum-likelihood (ML) cladograms produced with PhyML v3.0 with default parameters.
Download HGT_methanosarcina.tar (42.19 Mb)
Download README.txt (758 bytes)
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When using this data, please cite the original publication:

Garushyants SK, Kazanov MD, Gelfand MS (2015) Horizontal gene transfer and genome evolution in Methanosarcina. BMC Evolutionary Biology 15: 102. http://dx.doi.org/10.1186/s12862-015-0393-2

Additionally, please cite the Dryad data package:

Garushyants SK, Kazanov MD, Gelfand MS (2015) Data from: Horizontal gene transfer and genome evolution in Methanosarcina. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.j69p2
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