Data from: Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors

Warnock RCM, Parham JF, Joyce WG, Lyson TR, Donoghue PCJ

Date Published: November 14, 2014

DOI: http://dx.doi.org/10.5061/dryad.j8776

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title CytB+RAG1+R35
Downloaded 14 times
Description Alignment file (nexus format). Matrix contains the molecular markers CytB, RAG1 and R35. All sequences were downloaded from GenBank. Outgroups are excluded.
Download CytB+RAG1+R35.nex (106.7 Kb)
Details View File Details
Title CytB+RAG1+R35-inc-outgroups
Downloaded 10 times
Description Alignment file (nexus format). Matrix contains the molecular markers CytB, RAG1 and R35. All sequences were downloaded from GenBank.
Download CytB+RAG1+R35-inc-outgroups.nex (134.5 Kb)
Details View File Details
Title BEAST.xml
Downloaded 12 times
Description Input file for divergence time analysis using BEAST.
Download BEAST.xml (140.4 Kb)
Details View File Details
Title mcmctree._sequence_file
Downloaded 12 times
Description Sequence input file for divergence time analysis using MCMCTREE.
Download mcmctree._sequence_file.txt (86.93 Kb)
Details View File Details
Title mcmctree._tree_file._uniform_priors
Downloaded 15 times
Description Input tree for divergence time analysis in MCMCTREE. Includes minimum and maximum constraints on each node.
Download mcmctree._tree_file._uniform_priors.txt (815 bytes)
Details View File Details
Title mcmctree.usedata1 control file
Downloaded 16 times
Description Input control file for divergence time analysis in MCMCTREE.
Download mcmctree.usedata1.ctl (1.092 Kb)
Details View File Details
Title mcmctree._tree_file._minimum_bounds
Downloaded 15 times
Description Input tree for divergence time analysis in MCMCTREE. Includes minimum constraints only on each node.
Download mcmctree._tree_file._minimum_bounds.txt (859 bytes)
Details View File Details
Title mcmctree.usedata2 control file
Downloaded 12 times
Description Input control file for divergence time analysis in MCMCTREE, using the approximate likelihood method.
Download mcmctree.usedata2.ctl (1.111 Kb)
Details View File Details

When using this data, please cite the original publication:

Warnock RCM, Parham JF, Joyce WG, Lyson TR, Donoghue PCJ (2015) Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors. Proceedings of the Royal Society B 282(1798): 20141013. http://dx.doi.org/10.1098/rspb.2014.1013

Additionally, please cite the Dryad data package:

Warnock RCM, Parham JF, Joyce WG, Lyson TR, Donoghue PCJ (2014) Data from: Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.j8776
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: