Data from: Global population divergence and admixture of the brown rat (Rattus norvegicus)

Puckett EE, Park J, Combs M, Blum MJ, Bryant JE, Caccone A, Costa F, Deinum EE, Esther A, Himsworth CG, Keightley PD, Ko A, Lundkvist A, McElhinney LM, Morand S, Robins J, Russell J, Strand TM, Suarez O, Yon L, Munshi-South J

Date Published: September 26, 2016

DOI: http://dx.doi.org/10.5061/dryad.jb3tc

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Puckett_etal_RatPhylogeog_SNPs.tar
Downloaded 17 times
Description SNPs (l=32,127) discovered from a ddRAD-Seq project with Rattus norvegicus (n=314) and Rattus rattus (n=33) samples from around the world. SNPs are aligned to the Rattus norvegicus Rnor_6.0 genome and provided as binary PLINK files (.bed, .bim, .fam). See Tables S1 and S2 of the manuscript for locations for each sample name.
Download Puckett_etal_RatPhylogeog_SNPs.tar.gz (1.692 Mb)
Details View File Details
Title Puckett_etal-RatPhylogeog-MitoHaplotypes
Downloaded 5 times
Description Mitochondrial SNP haplotypes produced from ddRAD-Seq data. We identified 104 haplotypes in 144 brown rat (Rattus norvegicus) samples, that group into 10 clades. SNP positions found in Table S3 of the manuscript. Geographic distribution of haplotypes in Table S4 of the manuscript.
Download Puckett_etal-RatPhylogeog-MitoHaplotypes.fasta (13.25 Kb)
Details View File Details

When using this data, please cite the original publication:

Puckett EE, Park J, Combs M, Blum MJ, Bryant JE, Caccone A, Costa F, Deinum EE, Esther A, Himsworth CG, Keightley PD, Ko A, Lundkvist A, McElhinney LM, Morand S, Robins J, Russell J, Strand TM, Suarez O, Yon L, Munshi-South J (2016) Global population divergence and admixture of the brown rat (Rattus norvegicus). Proceedings of the Royal Society B 283(1841): 20161762. http://dx.doi.org/10.1098/rspb.2016.1762

Additionally, please cite the Dryad data package:

Puckett EE, Park J, Combs M, Blum MJ, Bryant JE, Caccone A, Costa F, Deinum EE, Esther A, Himsworth CG, Keightley PD, Ko A, Lundkvist A, McElhinney LM, Morand S, Robins J, Russell J, Strand TM, Suarez O, Yon L, Munshi-South J (2016) Data from: Global population divergence and admixture of the brown rat (Rattus norvegicus). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jb3tc
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: