Data from: "Transcriptomic resources for Hazelnut tree (Corylus avellana L.)" in Genomic Resources Notes Accepted 1 August 2015 to 31 September 2015

Lesur I, Kohler A, Martin F, Kremer A, Plomion C, Le Provost G

Date Published: October 28, 2015

DOI: http://dx.doi.org/10.5061/dryad.jc203

 

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Title Functionally annotated Corylus assembly
Description This file lists all 13,690 Coryllus avellana contigs with their annotation. We considered, for each contig (col 1), the best blast hit found in the Swissprot database (col2) and in the Non-redundant nucleotide database (col3). We associated to these contigs GO terms. GO terms IDs are listed in col4 and GO terms definition is listed in col 5 (MF: Molecular function; CC: Cellular component; BP: Biological process).
Download corylus_assembly_with_ALL_funcat_final.txt (2.249 Mb)
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Title Corylus avellana CAV2 transcriptomic assembly
Description In this file, the 13,690 CAV2 contigs sequences are listed in fasta format.
Download corylus_CLCBIO_meta_assembly_cdhitest_0.95.fasta (17.01 Mb)
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Title C. avellana root and ECM-root sequences with T. melanosporum similarity
Description Root ("Root_" prefix) and ECM-roots ("ECM_Roots_" prefix) sequences (col 1) showing similarities with the Tuber melanosporum genome are listed in this file. Each Corylus read is associated with at least one T. melanosporum scaffold (col2).
Download Hazel_Root_ECM_454reads_with_Tuber_hits.csv (1.762 Mb)
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Title Mapping of the Corylus avellana input sequences against the CAV2 assembly.
Description Alignments of the 836,641 Corylus avellana Roche sequences against the 13,690 CAV2 contigs in bam format.
Download mapping_all_454_renamed_on_CLCBIO_assembly.bam (34.71 Mb)
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Kohler A, Kremer A, Le Provost G, Lesur I, Lin G, Martin F, Plomion C, Wu A, Zhao F (2016) Genomic Resources Notes Accepted 1 August 2015 - 31 September 2015. Molecular Ecology Resources 16(1): 377. http://dx.doi.org/10.1111/1755-0998.12482

Additionally, please cite the Dryad data package:

Lesur I, Kohler A, Martin F, Kremer A, Plomion C, Le Provost G (2015) Data from: "Transcriptomic resources for Hazelnut tree (Corylus avellana L.)" in Genomic Resources Notes Accepted 1 August 2015 to 31 September 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jc203
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