Data from: From gene trees to a dated allopolyploid network: insights from the angiosperm genus Viola (Violaceae)

Marcussen T, Heier L, Brysting AK, Oxelman B, Jakobsen KS

Date Published: September 12, 2014

DOI: http://dx.doi.org/10.5061/dryad.jc754

 

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Title S_Files_140901
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Description Supplementary Files - appendices 1-2, figures S1-S11, tables S1-S6
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Title S_BEAST_GPI_cal
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Description BEAST phylogeny for GPI - calibrated analysis - FigTree tree file
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Title S_BEAST_GPI_cal
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Description BEAST phylogeny for GPI - calibrated analysis - XML input file
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Title S_BEAST_GPI_uncal
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Description BEAST phylogeny for GPI - uncalibrated analysis - FigTree tree file
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Title S_BEAST_NRPD2a_cal
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Description BEAST phylogeny for NRPD2a - calibrated analysis - FigTree tree file
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Title S_BEAST_NRPD2a_cal
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Description BEAST phylogeny for NRPD2a - calibrated analysis - XML input file
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Title S_BEAST_NRPD2a_uncal
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Description BEAST phylogeny for NRPD2a - uncalibrated analysis - FigTree tree file
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Title S_BEAST_SDH_cal
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Description BEAST phylogeny for SDH - calibrated analysis - FigTree tree file
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Title S_BEAST_SDH_cal
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Description BEAST phylogeny for SDH - calibrated analysis - XML input file
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Title S_BEAST_SDH_uncal
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Description BEAST phylogeny for SDH - uncalibrated analysis - FigTree tree file
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Title S_BEAST_trnLF
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Description BEAST phylogeny for trnL-trnF - FigTree tree file
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Title S_BEAST_trnLF
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Description BEAST phylogeny for trnL-trnF - XML input file
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Title S_BUGS_homoploid
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Description BUGS script for estimation of homoploid speciation times - TXT file
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Title S_BUGS_polyploid
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Description BUGS script for estimation of polyploid speciation times - TXT file
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Title S_MrB_8cp_gene
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Description MrBayes phylogeny for 8 chloroplast regions - NEXUS input file
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Title S_MrB_8cp_gene
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Description MrBayes phylogeny for 8 chloroplast regions - FigTree tree file
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Title S_MrB_GPI
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Description MrBayes phylogeny for GPI - NEXUS input file
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Title S_MrB_GPI
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Description MrBayes phylogeny for GPI - FigTree tree file
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Title S_MrB_NRPD2a
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Description MrBayes phylogeny for NRPD2a - NEXUS input file
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Title S_MrB_NRPD2a
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Description MrBayes phylogeny for NRPD2a - FigTree tree file
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Title S_MrB_SDH
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Description MrBayes phylogeny for SDH - NEXUS input file
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Title S_MrB_SDH
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Description MrBayes phylogeny for SDH - FigTree tree file
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Title S_MrB_trnLF
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Description MrBayes phylogeny for trnL-trnF - NEXUS input file
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Title S_MrB_trnLF
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Description MrBayes phylogeny for trnL-trnF - FigTree tree file
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When using this data, please cite the original publication:

Marcussen T, Heier L, Brysting AK, Oxelman B, Jakobsen KS (2015) From gene trees to a dated allopolyploid network: insights from the angiosperm genus Viola (Violaceae). Systematic Biology 64(1): 84-101. http://dx.doi.org/10.1093/sysbio/syu071

Additionally, please cite the Dryad data package:

Marcussen T, Heier L, Brysting AK, Oxelman B, Jakobsen KS (2014) Data from: From gene trees to a dated allopolyploid network: insights from the angiosperm genus Viola (Violaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jc754
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