Data from: Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta)

Wilkins LGE, Fumagalli L, Wedekind C

Date Published: August 10, 2016

DOI: http://dx.doi.org/10.5061/dryad.jg33m

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title OTU file
Downloaded 5 times
Description This file contains all the bacterial taxa (OTU = operational taxonomic unit of bacteria) that we could sequence on brown trout egg samples in our study. This file is used to work with QIIME. There is a parallel file to this one that contains all the metadata (map file).
Download otu_table_text.txt (4.269 Mb)
Details View File Details
Title Map file for QIIME analysis
Downloaded 3 times
Description This file contains all metadata to the OTU file, used with QIIME. it explains what the brown trout egg samples are and how they related to the OTU file.
Download map_file_submission.txt (22.62 Kb)
Details View File Details
Title Embryo performance across treatments and families
Downloaded 2 times
Description This file contains all the data on embryo performance. This includes survival, time until hatching, bacterial diversities on the eggs, and origin of the embryo (mother and father).
Download embryo_performance_submission.txt (176.5 Kb)
Details View File Details
Title R script for analysis of embryo performance
Downloaded 9 times
Description This is an R script that was used to analyze embryo performance (input file is called "embryo_performance_submission.txt" and also provided here). Data was analyzed with the R-package "lme4".
Download embryo_performance.R (14.66 Kb)
Details View File Details

When using this data, please cite the original publication:

Wilkins LGE, Fumagalli L, Wedekind C (2016) Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta). Molecular Ecology 25(19): 4930-4945. http://dx.doi.org/10.1111/mec.13798

Additionally, please cite the Dryad data package:

Wilkins LGE, Fumagalli L, Wedekind C (2016) Data from: Effects of host genetics and environment on egg-associated microbiotas in brown trout (Salmo trutta). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jg33m
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: