Data from: Robust inference on large-scale species habitat use with interview data: the status of jaguars outside protected areas in Central America

Petracca LS, Frair JL, Cohen JB, Calderón AP, Carazo-Salazar J, Castañeda F, Corrales-Gutiérrez D, Foster RJ, Harmsen B, Hernández-Potosme S, Herrera L, Olmos M, Pereira S, Robinson HS, Robinson N, Salom-Pérez R, Urbina Y, Zeller KA, Quigley H

Date Published: July 24, 2017

DOI: http://dx.doi.org/10.5061/dryad.jk6rf

 

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Title Jaguar Model Main Code
Downloaded 5 times
Description R code to build models of jaguar habitat use, with and without false positives, using JAGS
Download JaguarModel_MainCode_forDryad.R (9.199 Kb)
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Title Cross-validation Main Code
Downloaded 6 times
Description R code for two cross-validation methods used for our data: one novel method that seeks to replicate the observation process, leading to percent accuracy & probabilities of omission and commission, and the other method (based on Hooten & Hobbs 2015 and Miller & Grant 2015) that tests whether deviance is reduced via inclusion of hierarchical structure. Both methods implemented in JAGS.
Download CrossVal_MainCode_forDryad.R (42.94 Kb)
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Title Corridor ID
Downloaded 4 times
Description .csv with Corridor ID
Download Corridor_Max6_FP.csv (26.03 Kb)
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Title Effort
Downloaded 3 times
Description .csv with Effort data (% of year spent in sampling unit)
Download Effort_Max6_FP.csv (50.57 Kb)
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Title Field Season ID
Downloaded 4 times
Description .csv with Field Season ID
Download FieldSeason.csv (5.133 Kb)
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Title Jaguar Detection History
Downloaded 5 times
Description Data re: whether or not a jaguar or jaguar sign had been seen by the interviewee in the given sampling unit. Sampling units are rows, interview replicates are columns.
Download Jaguar_Max6_FP.csv (18.77 Kb)
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Title More Than Four
Downloaded 4 times
Description Data corresponding to whether or not >4 interviews were conducted in the unit (1/0)
Download MoreThanFour_v3.csv (10.44 Kb)
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Title Site Covariates
Downloaded 4 times
Description All site covariates considered in the analysis. Summarized at sampling unit level.
Download SiteCovariates.csv (319.8 Kb)
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When using this data, please cite the original publication:

Petracca LS, Frair JL, Cohen JB, Calderón AP, Carazo-Salazar J, Castañeda F, Corrales-Gutiérrez D, Foster RJ, Harmsen B, Hernández-Potosme S, Herrera L, Olmos M, Pereira S, Robinson HS, Robinson N, Salom-Pérez R, Urbina Y, Zeller KA, Quigley H (2017) Robust inference on large-scale species habitat use with interview data: the status of jaguars outside protected areas in Central America. Journal of Applied Ecology, online in advance of print. http://dx.doi.org/10.1111/1365-2664.12972

Additionally, please cite the Dryad data package:

Petracca LS, Frair JL, Cohen JB, Calderón AP, Carazo-Salazar J, Castañeda F, Corrales-Gutiérrez D, Foster RJ, Harmsen B, Hernández-Potosme S, Herrera L, Olmos M, Pereira S, Robinson HS, Robinson N, Salom-Pérez R, Urbina Y, Zeller KA, Quigley H (2017) Data from: Robust inference on large-scale species habitat use with interview data: the status of jaguars outside protected areas in Central America. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jk6rf
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