Data from: Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees

Wallberg A, Schöning C, Webster MT, Hasselmann M

Date Published: August 30, 2017

DOI: https://doi.org/10.5061/dryad.jn630

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Title SNP dataset for 39 Kenyan honey bees (part 0)
Downloaded 7 times
Description This dataset contains the 8+ million SNPs that were detected between 39 Kenyan honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 39_kenyan_honeybees.vcf.gz input file has been split into four numbered parts (0 to 3). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 39_kenyan_honeybees.vcf.gz
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Title SNP dataset for 39 Kenyan honey bees (part 1)
Downloaded 4 times
Description This dataset contains the 8+ million SNPs that were detected between 39 Kenyan honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 39_kenyan_honeybees.vcf.gz input file has been split into four numbered parts (0 to 3). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 39_kenyan_honeybees.vcf.gz
Download 39_kenyan_honeybees.vcf.gz.1.split (1.047 Gb)
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Title SNP dataset for 39 Kenyan honey bees (part 2)
Downloaded 7 times
Description This dataset contains the 8+ million SNPs that were detected between 39 Kenyan honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 39_kenyan_honeybees.vcf.gz input file has been split into four numbered parts (0 to 3). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 39_kenyan_honeybees.vcf.gz
Download 39_kenyan_honeybees.vcf.gz.2.split (1.047 Gb)
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Title SNP dataset for 39 Kenyan honey bees (part 3)
Downloaded 5 times
Description This dataset contains the 8+ million SNPs that were detected between 39 Kenyan honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 39_kenyan_honeybees.vcf.gz input file has been split into four numbered parts (0 to 3). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 39_kenyan_honeybees.vcf.gz.{0..3}.split > 39_kenyan_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 39_kenyan_honeybees.vcf.gz
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 0)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 1)
Downloaded 4 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.1.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 2)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.2.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 3)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.3.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 4)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.4.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 5)
Downloaded 4 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.5.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 6)
Downloaded 4 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.6.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 7)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.7.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 8)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.8.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 9)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.9.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 10)
Downloaded 5 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.10.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 11)
Downloaded 4 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.11.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 12)
Downloaded 6 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.12.split (1.047 Gb)
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Title SNP dataset for 148 Kenyan, African and Eurasian honey bees (part 13)
Downloaded 6 times
Description This dataset contains the 13+ million SNPs that were detected between 148 Kenyan, African and Eurasian honey bees using FreeBayes and that passed quality filtering. Details for SNP processing, sample labels and quality control is provided in the paper and its supplementary information. The original 148_honeybees.vcf.gz input file has been split into fourteen numbered parts (0 to 13). After downloading all parts, they can be joined to recreate the original file using the follwing UNIX command: cat 148_honeybees.vcf.gz.{0..13}.split > 148_honeybees.vcf.gz The VCF file can then be unzipped using the UNIX command: gunzip 148_honeybees.vcf.gz
Download 148_honeybees.vcf.gz.13.split (37.97 Mb)
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When using this data, please cite the original publication:

Wallberg A, Schöning C, Webster MT, Hasselmann M (2015) Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees. PLOS Genetics 13(5): e1006792. https://doi.org/10.1371/journal.pgen.1006792

Additionally, please cite the Dryad data package:

Wallberg A, Schöning C, Webster MT, Hasselmann M (2015) Data from: Two extended haplotype blocks are associated with adaptation to high altitude habitats in East African honey bees. Dryad Digital Repository. https://doi.org/10.5061/dryad.jn630
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