Data from: A multigene molecular assessment of cryptic biodiversity in the iconic freshwater blackfishes (Teleostei: Percichthyidae: Gadopsis) of south-eastern Australia

 

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Title Cytochrome b nexus file for Gadopsis
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Download gad.cytb.with.outs.final.nex (97.00 Kb)
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Title S7 sequence nexus file for Gadopsis and outgroups
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Download gads7.with.outs.nex (70.65 Kb)
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Title Combined Cytochrome b and S7 sequence data in nexus format
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Description The codes for each OTU are in the readme file. The first number is the population, the second is the name of the population and the third is the specific individual. Note that the readme file contains the codes for samples that are not in the nexus file.
Download gad_cytb.s7.concat.dryad.sub.nex (209.3 Kb)
Download README.txt (5.468 Kb)
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Title *beast xml file for Gadopsis (S7 and cytb)
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Description The codes for each OTU are in the readme file. The first number is the population, the second is the name of the population and the third is the specific individual.
Download gad.relax.long.xml (323.8 Kb)
Download README.txt (5.468 Kb)
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Title GARLI configuration file for best tree
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Description Settings used to generate the best ML tree in GARLI. This example is for cytb, but the settings were the same for each of the three datasets analysed except the number of attachments (which was twice the number of OTUs), outgroup and the model of sequence evolution.
Download garli.nobs.conf (1.36 Kb)
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Title GARLI configuration file for bootstrapping
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Description Settings used to generate 250 ML bootstrap replicates in GARLI. This example is for cytb, but the settings were the same for each of the three datasets analysed except the number of attachments (which was twice the number of OTUs), outgroup and the model of sequence evolution.
Download garli.bs.conf (1.357 Kb)
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When using this data, please cite the original publication:

Hammer MP, Unmack PJ, Adams M, Raadik TA, Johnson JB (2014) A multigene molecular assessment of cryptic biodiversity in the iconic freshwater blackfishes (Teleostei: Percichthyidae: Gadopsis) of south-eastern Australia. Biological Journal of the Linnean Society 111(3): 520-540. http://dx.doi.org/10.1111/bij.12222

Additionally, please cite the Dryad data package:

Hammer MP, Unmack PJ, Adams M, Raadik TA, Johnson JB (2014) Data from: A multigene molecular assessment of cryptic biodiversity in the iconic freshwater blackfishes (Teleostei: Percichthyidae: Gadopsis) of south-eastern Australia. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jn7b2
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