Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015

Bertini L, Proietti S, Caruso C

Date Published: April 29, 2015

DOI: http://dx.doi.org/10.5061/dryad.jp1mk

 

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Title SRX814890
Description Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.
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Title Blast Hits of Colobanthus quitensis transcriptome
Description All contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value<10-5) (Altschul et al. 1990).
Download blastx_C_quietensis_vs_Viridiplantae_no_P...ra.csv (28.34 Mb)
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When using this data, please cite the original publication:

Genomic Resources Development Consortium, Arthofer W, Bertini L, Caruso C, Cicconardi F, Delph LF, Fields PD, Ikeda M, Minegishi Y, Proietti S, Ritthammer H, Schlick-Steiner BC, Steiner FM, Wachter GC, Wagner HC, Weingartner LA (2015) Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015. Molecular Ecology Resources 15(4): 1014-1015. http://dx.doi.org/10.1111/1755-0998.12419

Additionally, please cite the Dryad data package:

Bertini L, Proietti S, Caruso C (2015) Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jp1mk
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