Data from: On the origin of the Norwegian lemming

 

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Title Lemmus sequence alignment for the partial dataset (172 bp)
Downloaded 6 times
Description Combined mitochondrial data. Control region: position 1-96; Cytochrome b: position 97-172.
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Title Lemmus sequence alignment for the complete dataset (520 bp)
Downloaded 6 times
Description Combined mitochondrial data. Control region: position 1-168; Cytochrome b: position 169-520.
Download Lemmus alignment complete dataset.fst (30.86 Kb)
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Title Lemmus.partial.11.7.inputBEAST
Downloaded 4 times
Description Input file to BEAST, for analysing the partial dataset using a mutation rate of 11.7 % per million years
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Title Lemmus.partial.11.7.result.BEAST
Downloaded 3 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 11.7 % per million years
Download Lemmus partial_11,7_BEAST_outputTreeAnnotator (37.89 Kb)
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Title Lemmus.partial.30.inputBEAST
Downloaded 2 times
Description Input file to BEAST, for analysing the partial dataset using a mutation rate of 30 % per million years
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Title Lemmus.partial.30.result.BEAST
Downloaded 2 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 30 % per million years
Download Lemmus partial_30_BEAST_outputTreeAnnotator (38.21 Kb)
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Title Lemmus.partial.50.inputBEAST
Downloaded 1 time
Description Input file to BEAST, for analysing the partial dataset using a mutation rate of 50 % per million years
Download Lemmus.partial.50.inputBEAST.xml (29.64 Kb)
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Title Lemmus.partial.50.result.BEAST
Downloaded 3 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the partial dataset using a mutation rate of 50 % per million years
Download Lemmus partial_50_BEAST_outputTreeAnnotator (38.05 Kb)
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Title Lemmus.complete.8.9.inputBEAST
Downloaded 4 times
Description Input file to BEAST, for analysing the complete dataset using a mutation rate of 8.9 % per million years
Download Lemmus.complete.8.9.inputBEAST.xml (44.48 Kb)
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Title Lemmus.complete.8.9.result.BEAST
Downloaded 2 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 8.9 % per million years
Download Lemmus complete_8,9_BEAST_outputTreeAnnotator (33.03 Kb)
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Title Lemmus.complete.30.inputBEAST
Downloaded 2 times
Description Input file to BEAST, for analysing the complete dataset using a mutation rate of 30 % per million years
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Title Lemmus.complete.30.result.BEAST
Downloaded 2 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 30 % per million years
Download Lemmus complete_30_BEAST_outputTreeAnnotator (35.38 Kb)
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Title Lemmus.complete.50.inputBEAST
Description Input file to BEAST, for analysing the complete dataset using a mutation rate of 50 % per million years
Download Lemmus.complete.50.inputBEAST.xml (44.48 Kb)
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Title Lemmus.complete.50.result.BEAST
Downloaded 1 time
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 50 % per million years
Download Lemmus partial_50_BEAST_outputTreeAnnotator (38.05 Kb)
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Title Lemmus.complete dated.30.inputBEAST
Description Input file to BEAST, for analysing the complete dataset using a mutation rate of 30 % per million years. Only including the directly dated sequences (Pleistocene & Modern)
Download Lemmus.complete dated.30.inputBEAST.xml (29.07 Kb)
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Title Lemmus.complete dated.30.result.BEAST
Downloaded 2 times
Description Tree file obtained from BEAST and summarised in TreeAnnotator. For the complete dataset using a mutation rate of 30 % per million years. Only with dated sequences
Download Lemmus complete dated_30_BEAST_outputTreeAnnotator (21.30 Kb)
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Title Lemmus.partial.inputMrBayes
Downloaded 2 times
Description Input file to MrBayes for analysing the partial dataset, using Mictotus as an outgroup
Download Lemmus.partial.inputMrBayes.nex (11.23 Kb)
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Title Lemmus.partial.result.MrBayes.nex.con
Downloaded 4 times
Description Tree file obtained from MrBayes, for the partial dataset.
Download Lemmus partial_MrBayes.nex.con.tre (20.81 Kb)
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When using this data, please cite the original publication:

Lagerholm VK, Sandoval-Castellanos E, Ehrich D, Abramson NI, Nadachowski A, Kalthoff DC, Germonpré M, Angerbjörn A, Stewart JR, Dalén L (2014) On the origin of the Norwegian lemming. Molecular Ecology 23(8): 2060-2071. http://dx.doi.org/10.1111/mec.12698

Additionally, please cite the Dryad data package:

Lagerholm VK, Sandoval-Castellanos E, Ehrich D, Abramson NI, Nadachowski A, Kalthoff DC, Germonpré M, Angerbjörn A, Stewart JR, Dalén L (2014) Data from: On the origin of the Norwegian lemming. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jp8r1
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