Data from: Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq

Karam M, Lefèvre F, Bou Dagher-Kharrat M, Pinosio S, Vendramin G

Date Published: September 11, 2014

DOI: http://dx.doi.org/10.5061/dryad.jr08b

 

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Title C_atl_RADseq_de_novo_assembly
Downloaded 15 times
Description Species: Cedrus atlantica Manetti Number of individuals: one single adult individual coming from the Luberon forest(43°47' N / 5°12' E, France) Plant tissue: needles (diploid) Sequencing method: Restriction site Associated DNA sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp) Data description: 66,656 contigs generated by de novo assembly Assembly tool: Velvet 1.2.06 (Zerbino & Birney 2008)
Download C_atl_RADseq_de_novo_assembly.fa (24.92 Mb)
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Title C_atl_mRNAseq_de_novo_assembly
Downloaded 10 times
Description Species: Cedrus atlantica Manetti Number of indiivudals: one single 2-year-old seedling that originated from the the Luberon forest (43°47' N / 5°12' E, France) and was grown in a greenhouse in a pot Plant tissues: needles and roots (diploid) Sequencing method: transcriptome sequencing, paired-end sequencing using the Illumina HiSeq2000 platform (Illumina Inc., San Diego, CA) (2 x 101 bp) Data description: 130,184 contigs generated by de novo assembly Assembly tool: CLC Genomics Workbench 4.8 (CLC bio, Cambridge, MA)
Download C_atl_mRNAseq_de_novo_assembly.fa (104.8 Mb)
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When using this data, please cite the original publication:

Karam M, Lefèvre F, Bou Dagher-Kharrat M, Pinosio S, Vendramin G (2015) Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq. Molecular Ecology Resources 15(3): 601-612. http://dx.doi.org/10.1111/1755-0998.12329

Additionally, please cite the Dryad data package:

Karam M, Lefèvre F, Bou Dagher-Kharrat M, Pinosio S, Vendramin G (2014) Data from: Genomic exploration and molecular marker development in a large and complex conifer genome using RADseq and mRNAseq. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.jr08b
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