Data from: The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB

Pracana R, Priyam A, Levantis I, Nichols RA, Wurm Y

Date Published: February 8, 2017

DOI: http://dx.doi.org/10.5061/dryad.js509

 

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Title dS, dN and dN/dS values between Atta cephalotes and Acromyrmex echinatior
Downloaded 5 times
Description Calculated by codeml from one-to-one orthologs (see article methods for details)
Download atta-acro-dnds.csv (754.5 Kb)
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Title Substitutions between the SB and Sb social chromosome variants in 403 protein coding genes
Downloaded 8 times
Description Substitutions between the SB and Sb variants in 403 protein coding genes in the social chromosome supergene region of the fire ant Solenopsis invicta. The table includes gene name, gene length, the number of synonymous and nonsynonymous substitutions (syn_substitutions and nonsyn_substitutions) and their rate (ds and dn).
Download genes.txt (14.45 Kb)
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Title consensus-bb
Downloaded 4 times
Description Consensus DNA sequence of 403 protein coding genes in the SB variant of the fire ant social chromosome supergene.
Download consensus-bb.fa (658.5 Kb)
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Title consensus-bb.cds
Downloaded 3 times
Description Consensus amino acid sequence of 403 protein-coding genes in the SB variant of the fire ant Solenopsis invicta social chromosome supergene.
Download consensus-bb.cds.fa (224.3 Kb)
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Title consensus-lb
Downloaded 2 times
Description Consensus DNA sequence of 403 protein-coding genes in the Sb variant of the fire ant Solenopsis invicta social chromosome supergene.
Download consensus-lb.fa (658.5 Kb)
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Title consensus-lb.cds
Downloaded 7 times
Description Consensus amino acid sequence of 403 protein-coding genes in the Sb variant of the fire ant Solenopsis invicta social chromosome supergene.
Download consensus-lb.cds.fa (224.3 Kb)
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Title Genotypes of B and b haploid males.
Downloaded 7 times
Description Filtered VCF file with variants called from whole-genome sequences of 16 Solenopsis invicta haploid males with Cortex. 8 samples have the Gp-9B genotype (f1_B to f7_B, gdo10), 8 samples have the Gp-9b genotype (f1b to f7b, gdo10).
Download all-filtered.vcf.bgz (51.88 Mb)
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Title SAMN00014755
Description Reads from sequencing a Gp-9B male
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Title SRX206834
Description Reads from sequencing a Gp-9 b male
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Title SRP017317
Description Reads from sequencing 7 Gp-9B and 7 Gp-9b males
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When using this data, please cite the original publication:

Pracana R, Priyam A, Levantis I, Nichols RA, Wurm Y (2017) The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB. Molecular Ecology 26(11): 2864–2879. http://dx.doi.org/10.1111/mec.14054

Additionally, please cite the Dryad data package:

Pracana R, Priyam A, Levantis I, Nichols RA, Wurm Y (2017) Data from: The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.js509
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