Data from: Megaphylogenetic specimen-level approaches to the Carex (Cyperaceae) phylogeny using ITS, ETS, and matK sequences: implications for classification

The Global Carex Group, Jiménez-Mejías P, Hahn M, Lueders K, Starr JR, Brown BH, Chouinard BN, Chung K, Escudero M, Ford BA, Ford KA, Gebauer S, Gehrke B, Hoffman MH, Jin X, Jung J, Kim S, Luceño M, Maguilla E, Martín-Bravo S, Míguez M, Molina A, Naczi RFC, Pender JE, Reznicek AA, Villaverde T, Waterway MJ, Wilson KL, Yang J, Zhang S, Hipp AL, Roalson EH

Date Published: September 21, 2016

DOI: http://dx.doi.org/10.5061/dryad.k05qb

 

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Title Supplemental Data 5
Downloaded 17 times
Description Reference tree. Topology revealed by the all-nrDNA matrix of concatenated sequences of ETS, ITS and matK. Branches with support below 50% bootstrap are collapsed.
Download Supplemental Data 1 _reference_tree.tree (103.6 Kb)
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Title Supplemental Data 6
Downloaded 25 times
Description Query tree. Topology revealed by the all-sequences matrix constrained by the reference tree, using concatenated sequences of ETS, ITS and matK. Branches with support below 75% aLRT are collapsed.
Download Supplemental Data 2 _query_tree_sections_...IT.tre (164.9 Kb)
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Title Supplemental Appendix 1
Downloaded 31 times
Description Preliminary assingment to sections according previously published data (see main text for details).
Download Supplemental Appendix 1_Sections list.xlsx (64.41 Kb)
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Title Supplemental Appendix 2
Downloaded 17 times
Description TDI values recovered for sections when tested on the query tree.
Download Supplemental Appendix 2_TDI sections quer...ee.csv (2.259 Kb)
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Title Supplemental Data 2
Downloaded 43 times
Description ETS sequences matrix
Download Supplemental Data 2 Cx_complete_ETS_2016_...rt.phy (1.525 Mb)
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Title Supplemental Data 3
Downloaded 31 times
Description ITS sequences matrix
Download Supplemental Data 3 Cx_complete_ITS_2016_...rt.phy (1.987 Mb)
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Title Supplemental Data 4
Downloaded 25 times
Description matK sequences matrix
Download Supplemental Data 4 Cx_complete_matK_2015...rt.phy (1.246 Mb)
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When using this data, please cite the original publication:

The Global Carex Group, Jiménez-Mejías P, Hahn M, Lueders K, Starr JR, Brown BH, Chouinard BN, Chung K, Escudero M, Ford BA, Ford KA, Gebauer S, Gehrke B, Hoffman MH, Jin X, Jung J, Kim S, Luceño M, Maguilla E, Martín-Bravo S, Míguez M, Molina A, Naczi RFC, Pender JE, Reznicek AA, Villaverde T, Waterway MJ, Wilson KL, Yang J, Zhang S, Hipp AL, Roalson EH (2016) Megaphylogenetic specimen-level approaches to the Carex (Cyperaceae) phylogeny using ITS, ETS, and matK sequences: implications for classification. Systematic Botany 41(3): 500-518. http://dx.doi.org/10.1600/036364416X692497

Additionally, please cite the Dryad data package:

The Global Carex Group, Jiménez-Mejías P, Hahn M, Lueders K, Starr JR, Brown BH, Chouinard BN, Chung K, Escudero M, Ford BA, Ford KA, Gebauer S, Gehrke B, Hoffman MH, Jin X, Jung J, Kim S, Luceño M, Maguilla E, Martín-Bravo S, Míguez M, Molina A, Naczi RFC, Pender JE, Reznicek AA, Villaverde T, Waterway MJ, Wilson KL, Yang J, Zhang S, Hipp AL, Roalson EH (2016) Data from: Megaphylogenetic specimen-level approaches to the Carex (Cyperaceae) phylogeny using ITS, ETS, and matK sequences: implications for classification. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k05qb
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