Data from: Host conservatism, geography, and elevation in the evolution of a Neotropical moth radiation
Jahner, Joshua P., University of Nevada Reno
Forister, Matthew L., University of Nevada Reno
Parchman, Thomas L., University of Nevada Reno
Smilanich, Angela M., University of Nevada Reno
Miller, James S., American Museum of Natural History
Wilson, Joseph S., Utah State University
Walla, Thomas R., Colorado Mesa University
Tepe, Eric J., University of Cincinnati
Richards, Lora A., University of Nevada Reno
Quijano-Abril, Mario A., University of Nevada Reno
Glassmire, Andrea E., University of Nevada Reno
Dyer, Lee A., University of Nevada Reno
Published Oct 03, 2017 on Dryad.
https://doi.org/10.5061/dryad.k0gq6
Cite this dataset
Jahner, Joshua P. et al. (2017). Data from: Host conservatism, geography, and elevation in the evolution of a Neotropical moth radiation [Dataset]. Dryad. https://doi.org/10.5061/dryad.k0gq6
Abstract
The origins of evolutionary radiations are often traced to the colonization of novel adaptive zones, including unoccupied habitats or unutilized resources. For herbivorous insects, the predominant mechanism of diversification is typically assumed to be a shift onto a novel lineage of host plants. However, other drivers of diversification are important in shaping evolutionary history, especially for groups residing in regions with complex geological histories. We evaluated the contributions of shifts in host plant clade, bioregion, and elevation to diversification in Eois (Lepidoptera: Geometridae), a hyper-diverse genus of moths found throughout the Neotropics. Relationships among 107 taxa were reconstructed using one mitochondrial and two nuclear genes. In addition, we used a genotyping-by-sequencing approach to generate 4,641 SNPs for 137 taxa. Both data sets yielded similar phylogenetic histories, with relationships structured by host plant clade, bioregion, and elevation. While diversification of basal lineages often coincided with host clade shifts, more recent speciation events were more typically associated with shifts across bioregions or elevational gradients. Overall, patterns of diversification in Eois are consistent with the perspective that shifts across multiple adaptive zones synergistically drive diversification in hyper-diverse lineages.
Usage notes
COI Sanger alignment
This file contains the aligned sequences for the cytochrome oxidase 1 gene.
eois_coi.nex
EF1-alpha Sanger alignment
This file contains the aligned sequences for the elongation factor 1-alpha gene.
eois_ef1alpha.nex
WG Sanger alignment
This file contains the aligned sequences for the wingless gene.
eois_wg.nex
GBS library preparation protocol
This file outlines the library preparation protocol for genotyping-by-sequencing.
gbs_protocol.pdf
Phylip to Fasta conversion script
This script converted the Phylip file that was generated by ipyrad into a Fasta file.
phylip_to_fasta.pl
E_apyraria_389.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_arenacea_46.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_auruda_45.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_basaliata_109.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_cancellata_27.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_cervina_44.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_coerulea_397.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_baezanum_450.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_capacibracteum_78.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_capacibracteum_81.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_capacibracteum_85.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_carpinteranum_58.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_carpinteranum_60.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_carpinteranum_68.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_cernuum_370.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_crassinervium_64.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_crassinervium_88.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_crassinervium_407.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_epigynium_76.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hieronymi_398.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hieronymi_402.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hispidum_163.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hispidum_167.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hispidum_366.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_hispidum_369.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_immutatum_214.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_immutatum_415.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_immutatum_423.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_immutatum_424.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_kellyi_355.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_kellyi_356.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_kellyi_457.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_kellyi_468.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_lanceifolium_444.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_lineatum_776.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_lineatum_802.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_lineatum_803.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_lineatum_806.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_napo-pastazanum_200.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_obliquum_complex_172.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_pseudonobile_283.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_stellipilum_49.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_stellipilum_50.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_stellipilum_52.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_umbellatum_135.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_umbellatum_194.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_common_umbellatum_195.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_dibapha_385.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_dibapha_386.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_dryope_427.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_dryope_428.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_filiferata_33.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_fucosa_47.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_golosata_39.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_guapa_429.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_ignefumata_29.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_jifia_36.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_mexicaria_433.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_mexicaria_434.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_multistrigaria_70.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_myrrha_380.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nigrinota_35.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_catana_11.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_catana_14.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_catana_19.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_catana_146.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_goodmani_445.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_goodmani_446.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_necula_478.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_numida_384.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_olivacea_28.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_pallidicosta_287.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_pallidicosta_288.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nr_viridiflava_31.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_numida_381.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nympha_603.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_nympha_612.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_obada_436.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_occia_439.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_occia_440.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_olivacea_648.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_paraviolascens_8.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_paraviolascens_21.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_planetaria_448.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_aduncum_688.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_aduncum_725.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_arboreum_683.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_arboreum_685.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_asclepiadifolium_820.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_baezanum_40.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_baezense_257.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_biolleyi_147.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_cinereoramulum_711.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_consanguineum_371.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crassinervium_96.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crassinervium_106.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crassinervium_234.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crassinervium_347.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crocatum_694.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_crocatum_699.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_fimbriulatum_832.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_heterotrichum_241.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_kelleyi_246.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_lanceifolium_43.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_lanceifolium_327.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_lechlerianum_815.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_marginatum_151.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_marginatum_187.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_marsupiiferum_418.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_marsupiiferum_419.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_musteum_51.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_napo-pastazanum_404.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_napo-pastazanum_406.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_obliquum_complex_138.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_obtusifolium_41.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_prismaticum_843.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_schiedeanum_841.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_stellipilum_686.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_rare_subsilvestre_270.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_russearia_437.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_russearia_438.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_1.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_4.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_94.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_118.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_185.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_193.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_231.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_466.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_sp_762.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_tegularia_223.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_tegularia_410.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_tegularia_416.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_tertulia_38.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_thetisaria_431.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_viridiflava_30.fastq
Individual fastq file from the genotyping by sequencing dataset.
E_zenobia_442.fastq
Individual fastq file from the genotyping by sequencing dataset.
Funding
National Science Foundation, Award: DEB-1145609 DEB-1442103
Location
South America
Central America
Central American Seaway
Andes Mountains