Data from: Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives.

Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH

Date Published: January 27, 2015

DOI: http://dx.doi.org/10.5061/dryad.k14bq

 

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Title TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.sort
Downloaded 14 times
Description Alignment of manuscript reference transcriptome sequence to reference genome with genetic map positions. bwa mem -t 6 -a -M \ HA412.v0.2.cabog.20111122.RHA280xRHA801.g Map2.fasta \ TranscriptomeRef_mar30.fa \ | samtools view -Sub - \ | samtools sort -@ 2 -m 2G -l 9 - \ TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122. RHA280xRHA801.gMap2.sort
Download TranscriptomeRef_mar30.TO.HA412.v0.2.cabo...rt.bam (23.53 Mb)
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Title TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.scaffolds.fasta
Downloaded 14 times
Description HA412 v0.2 scaffolds matching manuscript reference transcriptome. samtools view \ TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.sort.bam \ | cut -f 3 \ | sort \ | uniq \ >TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.scaffolds.list grepFasta \ TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.scaffolds.list \ < HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.fasta \ >TranscriptomeRef_mar30.TO.HA412.v0.2.cabog.20111122.RHA280xRHA801.gMap2.scaffolds.fasta
Download TranscriptomeRef_mar30.TO.HA412.v0.2.cabog...ta.gz (162.8 Mb)
Download README.txt (2.039 Kb)
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When using this data, please cite the original publication:

Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH (2015) Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives. New Phytologist 206(2): 830–838. http://dx.doi.org/10.1111/nph.13255

Additionally, please cite the Dryad data package:

Baute GJ, Kane NC, Grassa CJ, Lai Z, Rieseberg LH (2015) Data from: Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k14bq
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