Data from: Partial genotyping at polymorphic markers can improve heritability estimates in sibling groups

Gauzere J, Oddou-Muratorio S, Gay L, Klein EK

Date Published: March 14, 2016

DOI: http://dx.doi.org/10.5061/dryad.k25qf

 

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Title AdditiveValues
Downloaded 9 times
Description Untreated file generated by the simulation model that contains the additive genetic values and phenotypic values of the simulated parental population. First column = ID; second column = additive value; third column = phenotypic value
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Title GenotypeFile
Downloaded 9 times
Description Untreated file generated by the simulation model that contains the genotype of the individuals at the Nl neutral loci simulated (Nl columns)
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Title PhiACoefficients
Downloaded 6 times
Description Untreated file generated by the simulation model that contains the pairwise individual kinship coefficients estimated based on the simulated pedigree (matrix format)
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Title LoisellePaternalCoefficients
Downloaded 7 times
Description Untreated file generated by the simulation model that contains the pairwise individual paternal relatedness coefficients estimated based on the Loiselle approach (matrix format)
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Title Phenotype
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Description Untreated file generated by the simulation model that contains the phenotypic values of the simulated offspring population at the AsREML format (2 columns: ID, PHENO)
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Title InputParameter_AllelicFrequencies
Downloaded 4 times
Description Text file generated by the simulation model that resumes the information about the simulation parameters (VA, VE, Ng, Nfam, Noff...) and the drew allelic frequencies
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Title HSFS_Matrix
Downloaded 6 times
Description Relatedness matrix used by the "HSFS" method at the AsREML format (.grm). Matrix generated a posteriori with a R script.
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Title Hybrid_Matrix
Downloaded 8 times
Description Relatedness matrix used by the "Hybrid" method at the AsREML format (.grm). Matrix generated a posteriori with a R script.
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Title PhiA_Matrix
Downloaded 4 times
Description Relatedness matrix used by the reference method "PhiA" at the AsREML format (.grm). Matrix generated a posteriori with a R script.
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Title Relatedness_Matrix
Downloaded 5 times
Description Relatedness matrix used by the "Relatedness" method at the AsREML format (.grm). Matrix generated a posteriori with a R script.
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Title SimulatedPedigree
Downloaded 3 times
Description Untreated file generated by the simulation model that contains the pedigree of the simulated offspring population (Firts column = Individual identity, second column = Dam identity, third column = Sire identity)
Download SimulatedPedigree.ped (6.705 Kb)
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When using this data, please cite the original publication:

Gauzere J, Oddou-Muratorio S, Gay L, Klein EK (2016) Partial genotyping at polymorphic markers can improve heritability estimates in sibling groups. Molecular Ecology Resources 16(6): 1340–1352. http://dx.doi.org/10.1111/1755-0998.12536

Additionally, please cite the Dryad data package:

Gauzere J, Oddou-Muratorio S, Gay L, Klein EK (2016) Data from: Partial genotyping at polymorphic markers can improve heritability estimates in sibling groups. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k25qf
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