Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Moore LR, Chisholm SW

Date Published: September 26, 2014

DOI: http://dx.doi.org/10.5061/dryad.k282c

 

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Title Prochlorococcus genomes and cluster of orthologous groups of proteins (COGs)
Downloaded 85 times
Description Cluster assignments and annotation metadata for genes in the newly sequenced Prochlorococcus genomes described in this work, as well as in previously published genomes.
Download Prochlorococcus_COGS_annotations.txt (19.15 Mb)
Download README.txt (1.782 Kb)
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Title Detailed annotation information for Prochlorococcus genomes
Downloaded 46 times
Description Set of tables providing detailed annotation information for each newly sequenced Prochlorococcus genome, as well as re-annotations of previously published genomes.
Download detailed_Prochlorococcus_genome_annotations.zip (43.77 Mb)
Download README.txt (1.391 Kb)
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Title Prochlorococcus genome sequences
Downloaded 19 times
Description Set of nucleotide FASTA-formatted files containing the new Prochlorococcus genome assemblies described in this work.
Download Prochlorococcus_genome_sequences.zip (15.22 Mb)
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Title Complete set of initial contig assemblies from non-axenic Prochlorococcus cultures
Downloaded 10 times
Description Set of nucleotide FASTA files containing all assembled contigs (>500 bp) from each culture (i.e. both Prochlorococcus and heterotrophs) sequenced in this work. Each file contains the set of contigs assembled from the raw sequencing data, before any filtering to separate Prochlorococcus from heterotroph contigs.
Download Prochlorococcus_cultures_complete_contig_sets.zip (89.85 Mb)
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Title All predicted Prochlorococcus ORFs, nucleotide sequence
Downloaded 12 times
Description Set of nucleotide FASTA files containing the predicted nucleotide sequence for all open reading frames (ORFs) in each genome. This file includes ORFs from both the new genomes presented here as well as the re-annotation of previously released Prochlorococcus genomes.
Download all_Prochlorococcus_ORFs_fna.zip (20.12 Mb)
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Title All predicted Prochlorococcus ORFs, amino acid sequence
Downloaded 15 times
Description Set of protein FASTA files containing the predicted amino acid translation for all ORFs in each genome. This file includes ORFs from both the new genomes presented here as well as the re-annotation of previously released Prochlorococcus genomes.
Download all_Prochlorococcus_ORFs_faa.zip (13.61 Mb)
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When using this data, please cite the original publication:

Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Moore LR, Chisholm SW (2014) Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data 1: 140034. http://dx.doi.org/10.1038/sdata.2014.34

Additionally, please cite the Dryad data package:

Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Moore LR, Chisholm SW (2014) Data from: Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k282c
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