Data from: Species-level para- and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera

Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaens T, Efetov KA, Hebert PDN, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HCJ

Date Published: May 23, 2016

DOI: http://dx.doi.org/10.5061/dryad.k3mr1

 

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Title Supplementary figure 1
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Description ROC (i.e. receiver operating characteristic) curve (thick continuous line) from the leave-one-family-out cross-validation analysis. Area under the ROC curve is 0.988, which can be interpreted as the probability that the model under investigation will score a randomly sampled positive (non-monophyletic) sample higher than a randomly drawn negative (monophyletic) sample. The dashed line is a reference that would be expected if the model classifies cases randomly.
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Title Supplementary Table 1
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Description Species found non-monophyletic in ML trees, with information of type of non-monophyly, entangled species, K2P intraspecific variation, geographic relationship to the entangled species, possible oversplitting of species, presence of cryptic species and identification difficulties. Other remarks are shown in the last column.
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Title ML trees
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Description Maximum Likelihood trees used in the study (Newick format).
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Title NJ trees
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Description Neighbor-Joining trees in in the study (Newick format).
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Title NJ_p_trees
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Description Neighbor-Joining trees calculated under p-distance model of nucleotide substitution.
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Title Data from: Species-level para- and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera
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Description Collection localities in .klm format (viewable with Google Earth).
Download BOLD_Interactive_Map_-_DS-MARKALL.kml (52.37 Mb)
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When using this data, please cite the original publication:

Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaëns T, Efetov KA, Hebert PDN, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HCJ (2016) Species-level para- and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera. Systematic Biology 65(6): 1024-1040. http://dx.doi.org/10.1093/sysbio/syw044

Additionally, please cite the Dryad data package:

Mutanen M, Kivelä SM, Vos RA, Doorenweerd C, Ratnasingham S, Hausmann A, Huemer P, Dincă V, van Nieukerken EJ, Lopez-Vaamonde C, Vila R, Aarvik L, Decaens T, Efetov KA, Hebert PDN, Johnsen A, Karsholt O, Pentinsaari M, Rougerie R, Segerer A, Tarmann G, Zahiri R, Godfray HCJ (2016) Data from: Species-level para- and polyphyly in DNA barcode gene trees: strong operational bias in European Lepidoptera. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k3mr1
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