Data from: Opsin repertoire and expression patterns in horseshoe crabs: evidence from the genome of Limulus polyphemus (Arthropoda: Chelicerata)

Battelle B, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx P, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML

Date Published: May 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.k43t2

 

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Title Lp_phyloseq_database
Downloaded 13 times
Description Sequence IDs, information on data source (e.g. genbank accession number) and species identities for sequences used in making the large opsin phylogeny.
Download Lp_phyloseq_database.xlsx (142.4 Kb)
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Title Lp_ALLOPS
Downloaded 3 times
Description Phylip file of all sequences used in large opsin dataset
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Title Lp_ALLOPS_newick
Downloaded 3 times
Description Newick tree file for large opsin dataset phylogeny
Download Lp_ALLOPS_newick.txt (47.54 Kb)
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Title LpONLY.phy
Downloaded 3 times
Description Phylip formatted file of Limulus opsin ONLY dataset.
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Title LpONLY_newick
Downloaded 1 time
Description Newick tree file of Limulus opsin only phylogeny
Download LpONLY_newick.txt (1.171 Kb)
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When using this data, please cite the original publication:

Battelle B, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx P, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML (2016) Opsin repertoire and expression patterns in horseshoe crabs: evidence from the genome of Limulus polyphemus (Arthropoda: Chelicerata). Genome Biology and Evolution 8(5): 1571-1589. http://dx.doi.org/10.1093/gbe/evw100

Additionally, please cite the Dryad data package:

Battelle B, Ryan JF, Kempler KE, Saraf SR, Marten CE, Warren WC, Minx P, Montague MJ, Green PJ, Schmidt SA, Fulton L, Patel NH, Protas ME, Wilson RK, Porter ML (2016) Data from: Opsin repertoire and expression patterns in horseshoe crabs: evidence from the genome of Limulus polyphemus (Arthropoda: Chelicerata). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k43t2
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