Data from: Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

Hassan A, Naz A, Obaid A, Paracha RZ, Naz K, Awan FM, Muhammad SA, Janjua HA, Ahmad J, Ali A

Date Published: September 26, 2016

DOI: http://dx.doi.org/10.5061/dryad.k44f0

 

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Title Evolutionary relationship of the Acinetobacter baumannii strains based on 16SrRNA sequences.
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Description The evolutionary history was inferred using the Neighbor joining method. 1000 bootstrap re-samplings were done to estimate the consensus tree. The optimal tree with a sum of branch length = 0.5833 is shown. The tree is drawn to scale with branch lengths in same units as those of evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the maximum composite likelihood method and are in the units of the number of base substitutions per site. A) Illustrates the complete phylogenetic tree of all the included strains and B) shows the enhanced view of the selected clads. The strains like A. baumannii AYE, A. baumannii A1, A. baumannii 307-0294 all belonging to IC I fall in the same clade, indicating phylogenetically closeness to their clonal strains. A. baumannii D1279779 expressed as a separate branch of the tree, validating the unique properties of this strain in between IC I and IC II. Similarly strains belonging to IC II appeared in single clad, showing their close phylogenetic relationships.
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When using this data, please cite the original publication:

Hassan A, Naz A, Obaid A, Paracha RZ, Naz K, Awan FM, Muhmmad SA, Janjua HA, Ahmad J, Ali A (2016) Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets. BMC Genomics 17: 732. http://dx.doi.org/10.1186/s12864-016-2951-4

Additionally, please cite the Dryad data package:

Hassan A, Naz A, Obaid A, Paracha RZ, Naz K, Awan FM, Muhammad SA, Janjua HA, Ahmad J, Ali A (2016) Data from: Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k44f0
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