Data from: Hybridisation in closely related Rhododendron species: half of all species differentiating markers experience serious transmission ratio distortion

Marczewski T, Chamberlain DF, Milne RI

Date Published: July 7, 2015

DOI: http://dx.doi.org/10.5061/dryad.k53g5

 

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Title Original AFLP data matrix
Downloaded 7 times
Description this file has the following structure: - data for individuals are in rows, and loci are in columns - additionally, there are two columns in the beginning giving the population (pop), and species (species) of each individual; pop is either the population identifier [aga1 = aga-1, aga3 = aga-3, hyb1 = hyb-1, hyb2 = hyb-2, pha1 = pha-1, pha3 = pha-3] or indicates individuals repeated for error estimation [con (control) = individuals repeated on each plate, with A-E as part of the identifier indicating the plate; test = individuals repeated on a different plate] - the last row (quality) gives an indication of the peak quality for each locus (separation from other peaks, clarity of peak) [A - very good, B - good, C - bad, X - extremely bad; intermediate categories, e.g. A-B for between A and B are used as well; generally A and B are good for use]
Download ORIGINAL_AFLP_data.csv (187.3 Kb)
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Title simulated hybrids (R objects)
Downloaded 4 times
Description 7-zip archive containing the originally simulated hybrid populations; (sim.hyb.RData, sim.parent.RData) to use it copy the contents to /R/hybsim
Download original_data_R_hybsim.7z (1.130 Mb)
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Title original introgress results
Downloaded 3 times
Description 7-zip archive containing the original simulation results from introgress; (introgress.RData, sim.introgress.RData, introgress.test.l.locus.RData) to use it copy the contents to /R/introgress
Download original_data_R_introgress.7z (27.04 Mb)
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Title original Structure results
Downloaded 4 times
Description 7-zip archive containing the results from the structure runs for the original data; to use copy to /R/structure/results
Download original_results_structure.7z (2.960 Mb)
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Title Structure results (simulations)
Downloaded 4 times
Description 7-zip archive containing the results from the structure runs for the simulated hybrids; to use copy to /R/structure/results_sim
Download original_results_structure_sim.7z (14.44 Mb)
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Title R and Structure scripts
Downloaded 8 times
Download Scripts.7z (69.91 Kb)
Download README (2.718 Kb)
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When using this data, please cite the original publication:

Marczewski T, Chamberlain DF, Milne RI (2015) Hybridisation in closely related Rhododendron species: half of all species differentiating markers experience serious transmission ratio distortion. Ecology and Evolution 5(15): 3003-3022. http://dx.doi.org/10.1002/ece3.1570

Additionally, please cite the Dryad data package:

Marczewski T, Chamberlain DF, Milne RI (2015) Data from: Hybridisation in closely related Rhododendron species: half of all species differentiating markers experience serious transmission ratio distortion. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k53g5
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