Data from: Mapping of craniofacial traits in outbred mice identifies major developmental genes involved in shape determination

Pallares LF, Carbonetto P, Gopalakrishnan S, Parker CC, Ackert-Bicknell CL, Palmer AA, Tautz D

Date Published: November 4, 2015

DOI: http://dx.doi.org/10.5061/dryad.k543p

 

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Title Rcode
Downloaded 38 times
Description This folder contains four Rcode files necessary to reproduce our analyses. map.qtls.gemma.PCs.R is the master code that requires functions from other.code.R, run.gemma.R, and analyses.PCs.R.
Download Rcode.zip (6.453 Kb)
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Title Eigenvectors_PCA
Downloaded 23 times
Description This folder contains two files with the eigenvectors of the PCA done with skull shape and mandible shape data. These files can be used to project new shape data into our PCA.
Download Eigenvector_PCA.zip (11.25 Kb)
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Title Phenotype file
Downloaded 17 times
Description This file contains skull and mandible shape principal component (PC) scores for each mouse. PC scores were normalized to mean 0 and std of 1. Mandible PC scores were calculated from the regression residuals of shape ~ BMD. Skull and mandible centroid size (CS) data is also included.
Download pheno.mandskull.csv (497.8 Kb)
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Title Genotype data
Downloaded 20 times
Description This files contains genotype (SNP) data for each mouse.
Download geno.dosage.RData (115.4 Mb)
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When using this data, please cite the original publication:

Pallares LF, Carbonetto P, Gopalakrishnan S, Parker CC, Ackert-Bicknell CL, Palmer AA, Tautz D (2015) Mapping of craniofacial traits in outbred mice identifies major developmental genes involved in shape determination. PLoS Genetics 11(11): e1005607. http://dx.doi.org/10.1371/journal.pgen.1005607

Additionally, please cite the Dryad data package:

Pallares LF, Carbonetto P, Gopalakrishnan S, Parker CC, Ackert-Bicknell CL, Palmer AA, Tautz D (2015) Data from: Mapping of craniofacial traits in outbred mice identifies major developmental genes involved in shape determination. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k543p
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