Data from: Monocyte recruitment to the dermis and differentiation to dendritic cells increases the targets for Dengue virus replication

Schmid MA, Harris E

Date Published: December 5, 2014

DOI: http://dx.doi.org/10.5061/dryad.k5k30

 

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Title I_Dermis steadystate DC stain Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title I_Dermis steadystate DC stain WT
Downloaded 1 time
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title I_Dermis steadystate Mono stain Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title I_Dermis steadystate Mono stain WT
Downloaded 1 time
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download I_Dermis steadystate Mono stain WT.fcs (15.66 Mb)
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Title I_Epidermis steadystate Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download I_Epidermis steadystate Ifnar.fcs (9.483 Mb)
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Title I_Epidermis steadystate WT
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title II_Epidermis 24h ADE DENV Ifnar
Downloaded 1 time
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download II_Epidermis 24h ADE DENV Ifnar.fcs (8.990 Mb)
Download README.pdf (44.05 Kb)
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Title II_Epidermis 24h PBS Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title II_Epidermis 24h primary DENV Ifnar
Downloaded 1 time
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
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Title II_Exp 24h Epidermis Compensation Matrix
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download II_Exp 24h Epidermis DENV Compensation Matrix (1.203 Kb)
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Title III_Dermis 24h ADE DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download III_Dermis 24h ADE DENV Ifnar.fcs (26.81 Mb)
Download README.pdf (44.05 Kb)
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Title III_Dermis 24h PBS Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download III_Dermis 24h PBS Ifnar.fcs (19.98 Mb)
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Title III_Dermis 24h primary DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download III_Dermis 24h primary DENV Ifnar.fcs (49.77 Mb)
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Title III_Dermis steadystate Ifnar (C inf)
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download III_Dermis steadystate Ifnar (C inf).fcs (38.90 Mb)
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Title III_Exp 24h Compensation Matrix_Dermis
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download III_Exp 24h Compensation Matrix (1.011 Kb)
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Title IV_Dermis 48h ADE DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis 48h ADE DENV Ifnar.fcs (12.78 Mb)
Download README.pdf (44.05 Kb)
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Title IV_Dermis 48h PBS Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis 48h PBS Ifnar.fcs (30.74 Mb)
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Title IV_Dermis 48h primary DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis 48h primary DENV Ifnar.fcs (10.72 Mb)
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Title IV_Dermis 72h ADE DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis 72h ADE DENV Ifnar.fcs (20.63 Mb)
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Title IV_Dermis 72h primary DENV Ifnar
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis 72h primary DENV Ifnar.fcs (9.429 Mb)
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Title IV_Dermis steadystate Ifnar (C inf)
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Dermis steadystate Ifnar (C inf).fcs (18.00 Mb)
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Title IV_Exp 48 & 72h Compensation Matrix
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download IV_Exp 48 & 72h Compensation Matrix (983 bytes)
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Title V_Mono transfer Compensation Matrix
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Mono Ifnar to Ifnar Compensation Matrix (1.012 Kb)
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Title V_Ms1_Dermis mono Tx DENV-infected side
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms1_Dermis mono Tx DENV-infected side.fcs (59.95 Mb)
Download README.pdf (44.05 Kb)
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Title V_Ms1_Dermis mono Tx DENV, non-infected side
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms1_Dermis mono Tx DENV, non-infected side.fcs (48.40 Mb)
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Title V_Ms2_Dermis no Tx DENV-infected side
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms2_Dermis no Tx DENV-infected side.fcs (25.06 Mb)
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Title V_Ms2_Dermis no Tx DENV, non-infected side
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms2_Dermis no Tx DENV, non-infected side.fcs (35.81 Mb)
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Title V_Ms3_Dermis mono Tx steadystate left
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms3_Dermis mono Tx steadystate left.fcs (43.65 Mb)
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Title V_Ms3_Dermis mono Tx steadystate right
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms3_Dermis mono Tx steadystate right.fcs (35.96 Mb)
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Title V_Ms4_Dermis no Tx steadystate left
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms4_Dermis no Tx steadystate left.fcs (51.12 Mb)
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Title V_Ms4_Dermis no Tx steadystate right
Description File type: The repository includes FSC 3.0 files that were exported from Diva software (BD Biosciences) and can be opened with FlowJo software (TreeStar). In some cases, an updated compensation matrix is included for a specific experiment that should be applied to the FCS files within the FlowJo software. Fluorescent channels also indicate the specifically stained markers.
Download V_Ms4_Dermis no Tx steadystate right (57.80 Mb)
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Title Schmid Inventory of data repository
Description Read this PDF for instruction on how to read the data files, the experiments and identity of the files.
Download Schmid Inventory of data repository.pdf (44.05 Kb)
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When using this data, please cite the original publication:

Schmid MA, Harris E (2014) Monocyte recruitment to the dermis and differentiation to dendritic cells increases the targets for Dengue virus replication. PLoS Pathogens 10(12): e1004541. http://dx.doi.org/10.1371/journal.ppat.1004541

Additionally, please cite the Dryad data package:

Schmid MA, Harris E (2014) Data from: Monocyte recruitment to the dermis and differentiation to dendritic cells increases the targets for Dengue virus replication. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k5k30
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