Data from: Population genomic variation reveals roles of history, adaptation, and ploidy in switchgrass

Grabowski PP, Morris GP, Casler MD, Borevitz JO

Date Published: June 23, 2014

DOI: http://dx.doi.org/10.5061/dryad.k77nh

 

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Title De-multiplexing Functions
Downloaded 27 times
Description Functions in R for de-multiplexing (assigning sample identify for each read using the sequence barcode at the beginning of the read) the raw sequencing data. The raw data itself is stored on the NCBI SRA
Download demultiplexing_functions.r (21.10 Kb)
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Title Diploid Genotypes
Downloaded 19 times
Description Tab-delimited file for the diploid genotypes.
Download diploid_genotypes.tab (60.22 Mb)
Download README.txt (793 bytes)
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Title Pseudo-haploid genotypes
Downloaded 21 times
Description Tab-delimited file with the pseudo-haploid genotypes used for analysis.
Download haploid_genotypes_1.tab (5.787 Mb)
Download README.txt (839 bytes)
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Title Barcode Information for Sequencing Libraries
Downloaded 9 times
Description Example of a tab-delimited table containing the information to connect barcodes to samples in different sequencing libraries. This can be used in conjunction with the R functions to de-multiplex the raw data.
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Title Sample Metadata
Downloaded 13 times
Description Metadata for the samples. Includes sample name, population, ploidy, phenotype, sequencing read count, and inferred gene pool.
Download sample_metadata.tab (7.474 Kb)
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When using this data, please cite the original publication:

Grabowski PP, Morris GP, Casler MD, Borevitz JO (2014) Population genomic variation reveals roles of history, adaptation, and ploidy in switchgrass. Molecular Ecology 23(16): 4059-4073. http://dx.doi.org/10.1111/mec.12845

Additionally, please cite the Dryad data package:

Grabowski PP, Morris GP, Casler MD, Borevitz JO (2014) Data from: Population genomic variation reveals roles of history, adaptation, and ploidy in switchgrass. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.k77nh
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